Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_2024 |
Symbol | |
ID | 7316413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 2145951 |
End bp | 2147978 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643616916 |
Product | DNA ligase (NAD(+)) |
Protein accession | YP_002514091 |
Protein GI | 220935192 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00334946 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCGAGA TCCCCGAGAA GGTTCGCAAG CGGGTCGCCT CACTGCGCGA CGAGCTGGAC TATCACAATC ACCGTTACTA CGTGCTGGAC GACCCGGAGA TCCCGGACGC CGCCTATGAC GCGCTGATGC GCGAGCTGCA GGATCTGGAG GCGAAGTATC CCGAGCTGGT GACGCCGGAC TCGCCCACCC AGCGGGTGGG CGGTGCGCCG CTCAAGGCCT TCGAGGAGGC CAGGCACCTG CTGCCCATGC TGTCCCTGGA CAACGCCTTC GAGGAAGCCG ACGTGCTCGC CTTCGAGAAG CGCATCCGGG ACCGGCTGGG GGAAGAATCC GAGATCGAGT TTGCCGTGGA GCCCAAGCTG GATGGACTCG CCATCAGCCT GCTCTATGAG GATGGCCACC TGGTGCGCGG CGCCACCCGC GGCGACGGCG CCACCGGCGA GGACGTCACC GCCAACGTGC GCACCATCCG CGCCATCCCG CTCAGGCTCC AGGGCCGGGG CTGGCCGAAG CTGCTGGAGG TGCGTGGCGA GGTGTACATG GACCGGGCCG GTTTCGAGGC CTTCAACCGC GAGGCGGCTT CGAGGGGCGA GAAGGTGTTC GTCAACCCCC GCAACGCCGC CGCCGGCAGC CTGCGTCAGC TGGATTCCCG CATCACCGCG AAGCGTCCGC TCACCTTCTT CGCCTACGGC GCCGGTCACG TGGAGGGCGG CGAACTGCCG GACACCCACG CGGCGGTGCT CGACGCCCTG GCCGAATGGG GGCAGCGGGT GTGCCCCGAG CGGGACGTGG TGACCGGCGC GGCCGGCTGT CTCGAGTATT ACCGGCGCAT CGGCGAGCGC CGCGACGGCC TGCCCTATGA CATCGATGGC GTGGTCTACA AGGTCAACCG CTTCGAGCTG CAGCAGCGTC TGGGCTTCGT CTCCCGCGCG CCGCGCTGGG CCATCGCCCA CAAGTATCCC GCCCAGGAGC AGATGACGCT GCTGCGCGAC GTGGAATTCC AGGTGGGCCG CACCGGCGCG CTCACCCCGG TGGCGCGGCT CGAACCGGTG TTCGTGGGTG GCGTGACCGT GAGCAACGCC ACGCTGCACA ACATGGACGA GGTGGAGCGT AAGGACGTGC GCATCGGCGA CACGGTGATC GTGCGCCGCG CCGGCGACGT GATCCCCGAG GTGGCGGCGG TGGTGCTCTC CAGACGCCCG CACAATGCGC GTCACGTGGT AATGCCCACA CACTGCCCGG TCTGCGGTTC CGAGATCGTG CGCTCGGAAG GCGAGGCGGT GGCCCGGTGT TCCGGCGGTC TGTACTGTGC CGCCCAGCGC CGCGAGGCCA TCAAGCACTT CGCCTCGCGC CGCGCCATGG ACATTGAGGG CCTGGGCGAC AAGCTGGTGG AACAGCTGGT GGACGCGGGC CTGGTGGATC ATGTGGACGG CCTGTACCGG CTCACGGCGG AACAGCTGGC GGGCCTGGAG CGCATGGGCG AGAAGTCTGC CCACAACCTG GTGGATGCCC TGGAGAAGAG CAAGCACACC CAGTTGGCGC GGTTCATCTT CGCGCTCGGC ATCCGCGAGG TGGGCGAGGC CACGGCCCGC GCCCTGGCGA TCCATTTCGG TGGCCTGGAT GCGCTCATGG CCGCCGACGA GGAGGCCCTC ATGCAGGTGC CCGACGTGGG TCCGGTGGTG GCCCACCACG TGGCCACCTT CTTCCAGCAG CCCCACAACC GCGAGGTGAT CGACGCCCTG CGTGAGGCCG GCGTGCACTG GGAGGAAAGC GAACCCGCGG CTCTCCAGGC CGAGGACCTG CCCCTGTCCG GCAATACCTA CGTGCTCACC GGCGCGCTGG AATCCATGAC CCGGGAGGAG GCCGGCGATC GCCTCATGGC CCTGGGCGCC AAGGTGAGCG GCAGCGTGTC GAAAAAGACC ACCGCCGTGA TCGCCGGCGA GGCGGCGGGC TCGAAACTGG CCAAGGCGGA GAAGCTGGGC GTGCCGGTGT TGAGCGAGGC TGAGTTCCTT GAGTTGATAG GGGAGTGA
|
Protein sequence | MSEIPEKVRK RVASLRDELD YHNHRYYVLD DPEIPDAAYD ALMRELQDLE AKYPELVTPD SPTQRVGGAP LKAFEEARHL LPMLSLDNAF EEADVLAFEK RIRDRLGEES EIEFAVEPKL DGLAISLLYE DGHLVRGATR GDGATGEDVT ANVRTIRAIP LRLQGRGWPK LLEVRGEVYM DRAGFEAFNR EAASRGEKVF VNPRNAAAGS LRQLDSRITA KRPLTFFAYG AGHVEGGELP DTHAAVLDAL AEWGQRVCPE RDVVTGAAGC LEYYRRIGER RDGLPYDIDG VVYKVNRFEL QQRLGFVSRA PRWAIAHKYP AQEQMTLLRD VEFQVGRTGA LTPVARLEPV FVGGVTVSNA TLHNMDEVER KDVRIGDTVI VRRAGDVIPE VAAVVLSRRP HNARHVVMPT HCPVCGSEIV RSEGEAVARC SGGLYCAAQR REAIKHFASR RAMDIEGLGD KLVEQLVDAG LVDHVDGLYR LTAEQLAGLE RMGEKSAHNL VDALEKSKHT QLARFIFALG IREVGEATAR ALAIHFGGLD ALMAADEEAL MQVPDVGPVV AHHVATFFQQ PHNREVIDAL REAGVHWEES EPAALQAEDL PLSGNTYVLT GALESMTREE AGDRLMALGA KVSGSVSKKT TAVIAGEAAG SKLAKAEKLG VPVLSEAEFL ELIGE
|
| |