| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1994 |
|---|
| Symbol | |
|---|
| ID | 7316383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2113875 |
|---|
| End bp | 2116388 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643616887 |
|---|
| Product | ABC transporter, permease protein |
|---|
| Protein accession | YP_002514062 |
|---|
| Protein GI | 220935163 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTCA CCTCGCGCGC CCTGTGGCGG GACGCCCGGC GCCACCCCTG GCAATGGAGC
CTGGCGCTGC TGGGCGTGGC CCTGGGGGTG GCGGTGGTGG TGGCCGTGGA CCTGGCCAAC
CATAGCGCCT CCCGGGCCTT CGGTCTGTCC CTGGAGGCGG TCTCGGGCAA GGCCACCCAC
CGGATCGAGG CCACCGGCCC CGGGGGGCTG GACGAGGCCC TGTTCACCCG CCTGCGCATG
GCCGGCATCC GGCCCAGCGC CCCGGTGGTG GAGGGCCACG TGCGCGTGGA CGGCGAGACC
TTCCCGTTGC TCGGCCTGGA GCCCTTCTCC GAGGCCCCGT TCCGGAGTCA TCTGACCGGG
GTGCTGGACC CCGCGGCACG GGAGCTGGTT GCGCGGCCCG ACACCCTGGC GCTCAGCCGC
GGACTCGCCC GGCGTCTGGG TCTTGAGGCT GGGGACAGTC TTACGGTCAC CGCCGCCTCG
GGACGGCAGG CGCTCACCGT GGGCGCCATC CTGGAATCCC CGGCGCCCGG GGTGGAGGGC
CTGATGCTCA CCGACATCGC CACCGCCCAG GTGCTGCTGG AGCGGGTGGG AAGGCTGGAC
CGCATCGACC TGATCCTGCC GCAGGGCGCC GATCCCGATA CCCTGCTGGC CGGGTTCCTG
CCGCCGGGTG CCCGGGTGCT GGAGACCGGG GCGCGGGAAG ACTCGGCGCG GCAGTTGACC
CGGGCCTTTC ACATCAACCT CACCGCCATG AGTCTGCTGG CCCTGCTGGT GGGCGGTTTC
CTCATCTACA ACACCCTCAT GTTCGCGGTG CTGCGCCGCC GCCCGCTGCT GGCCGCACTG
CGCACCCTGG GCGTGACCCG GGCCGAGATC TTCCGGCTGG TGCTGCTGGA GGCCACGGTG
CTGGCCCTGC TGGGGGGTGT GCCCGGGCTG CTGCTCGGAC TGCTGGTGGG GCAGGGCCTG
GTGCAGCTGG TGACGCGCAC CATCAATGAC CTCTATTTCG TGCTCTCGGT GACCGGCCTG
CACGTCTCCC CATGGCTGTT GCTCAAGGGG CTCGGCCTGG GGCTGGGTGC AGCCTGGATC
GCCGCCCTGG CACCCGCCTG GGAGGCGGCC CGCACCCGTC CCCGGGAAGG CTTGCGACGC
TCGGGCCTGG AGCGGCGCGC CCACCGGCTC ATGCCCTGGC TGGCGCTGGC GGGCGTGGTG
CTGATCCTGG CCGGTTACGG ATTGGTGCCG GCCAGCCAGG GGCTGGTGGC CGGATTCATC
GCCCTGTTCC TGATGATCAT GGGCTACAGC CTGCTGGTGC CGCTCGGGGT CTGGTTGCTG
TCCCGGCTGC TGGCCCGCCC CCTGGGCGGT GTGTTCGGCA TCACCGGTCG TCTTGCGGCA
CGCGGTCTGG GTGCGGCGCT CAGCCGCACC GGCGTGGCGG TGGCGGCGCT CACGGTGGCG
GTCTCGGCGA CGGTGGGCGT GGGCATCATG GTGGACAGCT TCCGCACCAC GGTGCAGGGC
TGGCTGGGCC ATACCCTGCA AAGCGCGCTT TACGTCACCT CGCCCGCACC CGGCGACGAG
CGGGCCGGCT CTCTGCTGCC CGATGGCGTG ATGGAACGGG TCGGGTCCCT GCCGGAGGTG
GCGGCCTTCA GCACCGGGCG GCGCATCCGG GTGGCCTCCA GTCACGGCGA TGTGGACCTT
TTCGTCATGG ACCCGGCGCC GGCGAGCTTC GAGGGCTTCC GGTTCCGTGC CGGTTCACCG
GCCCAGGCCT GGCCTCGTTG GCAGGCGGGG GAGGTGGTCC TGGTGTCCGA GCCCTTCGCC
TGGCACCACC GGGTATCGGT GGGCGATGAA CTGAAGCTCC ACACCACAAA AGGCGAGCGG
GTGTTTCCCG TGGCCGGTAT CTACCAGGAT TACGGTTCCC AGCAGGGCGT GGTGCTCATG
GCCCGCGATC TGTATGAAAA ATTCTGGGAG GAACGCCGTG TCGGTTCCCT GGGGGTTTAT
CTGGCGCCCG GGGTGGAGGT ATCCGCCGGG GTCGAGGCGG TGCGCCGCGC CCTGGCGGAT
CTGCCAGAGC CGGTGCTGGT GACTGCCGCC GCCGAGATCC GCGAGGCCTC CATGGAGATC
TTCGACCGCA CCTTCGCCAT CACCCACGTG CTGCGCCTGC TCACCGTGGG CGTGGCCTTC
GTGGGCATCC TGAGCGCGCT CATGGCCCTG CAGCTGGAGC GCGCCCGGGA GCACGCCGTG
CTGCGCGCCA CGGGCATGAC CCCGGGGCAG GTGACCGGCC TCGTGACCCT CCAGGGCGCG
CTGCTGGGCC TGGCCGCCGG GCTGCTGGCC ATCCCCCTGG GCATGATGAT GGCGGACGTG
CTGATCGACG TGATCAACCG ACGCTCCTTC GGCTGGAGCA TGCAGCAGCA CGTGCCGCCG
GGTGTGCTGG TGGAGGCGGT CTGGCTGGCG GTGATCGCGG CCCTGCTGGC CGGCCTGCGT
CCTGCGTGGC GCATGGGGCG GGTCAGGCCG GCACAGGCCT TGAGGGAAGA ATGA
|
|---|
| Protein sequence | MTLTSRALWR DARRHPWQWS LALLGVALGV AVVVAVDLAN HSASRAFGLS LEAVSGKATH
RIEATGPGGL DEALFTRLRM AGIRPSAPVV EGHVRVDGET FPLLGLEPFS EAPFRSHLTG
VLDPAARELV ARPDTLALSR GLARRLGLEA GDSLTVTAAS GRQALTVGAI LESPAPGVEG
LMLTDIATAQ VLLERVGRLD RIDLILPQGA DPDTLLAGFL PPGARVLETG AREDSARQLT
RAFHINLTAM SLLALLVGGF LIYNTLMFAV LRRRPLLAAL RTLGVTRAEI FRLVLLEATV
LALLGGVPGL LLGLLVGQGL VQLVTRTIND LYFVLSVTGL HVSPWLLLKG LGLGLGAAWI
AALAPAWEAA RTRPREGLRR SGLERRAHRL MPWLALAGVV LILAGYGLVP ASQGLVAGFI
ALFLMIMGYS LLVPLGVWLL SRLLARPLGG VFGITGRLAA RGLGAALSRT GVAVAALTVA
VSATVGVGIM VDSFRTTVQG WLGHTLQSAL YVTSPAPGDE RAGSLLPDGV MERVGSLPEV
AAFSTGRRIR VASSHGDVDL FVMDPAPASF EGFRFRAGSP AQAWPRWQAG EVVLVSEPFA
WHHRVSVGDE LKLHTTKGER VFPVAGIYQD YGSQQGVVLM ARDLYEKFWE ERRVGSLGVY
LAPGVEVSAG VEAVRRALAD LPEPVLVTAA AEIREASMEI FDRTFAITHV LRLLTVGVAF
VGILSALMAL QLERAREHAV LRATGMTPGQ VTGLVTLQGA LLGLAAGLLA IPLGMMMADV
LIDVINRRSF GWSMQQHVPP GVLVEAVWLA VIAALLAGLR PAWRMGRVRP AQALREE
|
|---|
| |