Gene Tgr7_1864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_1864 
Symbol 
ID7315194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp1985626 
End bp1988274 
Gene Length2649 bp 
Protein Length882 aa 
Translation table11 
GC content66% 
IMG OID643616755 
Productputative diguanylate cyclase 
Protein accessionYP_002513932 
Protein GI220935033 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.327534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTGCA ACCGCCTGTA CATCTCCCGG CCCAAGGAAT CGACACAGCG TGGCATCTCC 
CGAGCACCGC TCAGAACCCT CGCCAAGGCG CCGACCCGGC CCCATGTCCC TGTGTCACTC
CGAGCCATGC CGTTGAAGAT CTCGCGCTGG CCCCTGCTGG CGGGTTGCCT TGCGGGCGGC
CTGATGCTGC TCGTGCTTTT CAGCCTGCTG CAGGTCTGGA AGCAGCGGGT TCAGGACGAG
ACCCGCGCCG AGCTGGTGGG GCAACTGGGC AATCTCCGGG CCCGGCTGGA ATCCGAGCTC
AATGCGGTGA TCCACGTCAC CGACGGTCTG GTCACCTACA TCATGTTCAA CCCGGACCTG
GGCGAGACCG AGTTCGACGC CATCGCCGCC ATGCTCATGG AACGCAGGCC GGGGCTGATC
AGCCACTTCA CCGCTGCGCC CGACAACGTC ATCCGCTATC TCCATCCCCT GGAAGGCAAT
CGTGCGGCCC TGGGCCTGGA CCTCATGAGC CACCCGGAGC AGTCCGGTTC GGTGCTGGAC
ATGATGGAGC GCCGCTCGAC GGTGCTCGCC GGTCCCTGGG AGCTGGTGCA GGGTGGCCTG
CGCCTGATCA TCCGCACGCC CATCTTCGTG CCTGCCCACG TGGCCGGGAC CGAGGACGAC
CGCTACTGGG GACTGGTCTC CATTCCCGTG GACATGCAGC GCCTGTACGA GGCGGCCGGG
CTGGGTTACT TCGAGCGCAG CATGGACATC GCCATCCGCG GGCGGGACGG CCTGGGCGCT
CGGGGTGAGA CCTTCTACGG CGATCCGGCG CTGTTTCGCC GTGACAGCCT GCGCCAGACG
GTGACCATGC TGGGGGGCGA GTGGGAACTG GCCGCCGAAC CCAGTGGCGG CTGGCCGGCG
GTGACGCCCG TCGGCGGTCT CTGGGGTCTG ATCTGGCTGA TCACGCTGCT CACGGGCGCG
CTGGCCTGGT ATCTGAGCCT CCAGGGACAG CGCCTGCGCC AGTCGGAGGT CAAGTACCGG
GCGCTGATGG AGAACCTGAG CGACGGCGCG TGCATCGTCC AGGACGGCTG GCTGCGTTAT
GTGAATCCCC GCTTCAGGGA CATCTTCGGC CATGACGAAG AATTACTGCT GTCTCATCAG
CTGAGTGACT TCCTGGTCGC CGAGGACCGC GATCAGCTCG CCAGACTCAT GTCCAGGGTG
ATCGCCGATC CTGCCCGCCC CGGACCGCTG GAGACGGAGC TTCGCATCCG CACCGGTGAT
GCGGGGCACA GCTACGTGCG CATCAACCTG AGCGCCATGG CGTGGGAGGA CGGGCCGGCG
ATACTGGCGA CGGTTTCCGA CATCGATGAC CGCAAGCGGC TGGCCAACCA GCTGCTCGAC
AGCCATGAGC GGCTCAACGC CATCATCCGG GCACTGCCGG ACATCGGTTT CATCATCGAC
GACCAGGGGC AGTACCGGGA TGTCTTCGGC GGCCTGGACA GCCAGCTGTA CCACCGGGGG
CAGGCGCTGA TCGGCAAGCG CCTGCACGAG GTACTGCCGC TGGAGCTGGC GGACCGCTTC
CTGTCGGTGG TGCACAAGGC CCTGGAGACC TCGAGCCTTC AGACCCTGGA ATATGCCCTG
AGCGCCGAGC AGATCAGTAT CCCGCCCAAG GGAGGTCCCG ATGGAACCCT GTGGTTCGAA
GGGCGTGTCA TGGCCATGGG GGCCAGGGTC TTCGACCGCC CCGCGGTTAT CTGGCTGGCC
ATGAATGTCA CCGCGCGCAA GCGTCTGGAG GAATCCATGC GCCTCAATGC CCGGGTGTTC
GAGGACAGCA ACGAGGGCAT CTTCATCACC GATGCGGGCA ACCGCATCAT CTCCGCCAAC
ACGGCCTTCA CGCGCATCAC CGGCTATGAA GCCGCCGAGG TGATCGGTCG CAATCCGGGA
CTGCTCAGCT CCGGCATGCA CGACGAGGCC TTTTATCAGT CCCTGTGGGA ACAGGTGCTG
CTGCACGGGC GCTGGGAAGG GGAGATCTGG AACCGGCGCA AGGACGGTCG TGTGTATCCC
CAGAACCTGT CCATCAGCGT GGTGCGCGAT GGTGAGGGAC GCATCAGCCA CCACATCGCC
ATCTTCTCCG ACATCACCCG GCGCAAGGAG GCCGAGGCCC AGATCCGGCA CATGGCACTG
CACGACAACC TCACCGGGCT GGCCAACCGC ACCCTGTTGC GGGATCGCCT GACACAGGCC
ATCGAACAGG CGCGACGTGA CAGGAACAGC CTGGCGCTGC TGTTCATCGA TCTGGACGAT
TTCAAGCCGG TCAATGATAC CCACGGCCAC GAGGCGGGGG ACCGGGTGCT CAAGGAAGTG
GCTCAGCGTC TGCGGGCTGC GGTGCGCCGG GTGGACACCG TGGCGCGCAT GGGCGGGGAT
GAGTTCGTGA TTCTGCTCCA GGCCCTGGAG CAGGAGGACA TGGCCATCCA GGTGGCCGAA
AAGATCATCG ATTCACTGTC CAGGCCGATA CAACTCAACG GCCAGACATG CCTGCTGGGG
GCCAGCGTCG GCATCGCCCT GCATCCCCGC CATGGCGAGG ACCACGACGG CCTGATGCGG
GCCGCCGACC AGGCGCTTTA CCAGGCCAAG TCGGCAGGCA AGAACCGCTA CCAGGTCGCC
GGGTACTGA
 
Protein sequence
MSCNRLYISR PKESTQRGIS RAPLRTLAKA PTRPHVPVSL RAMPLKISRW PLLAGCLAGG 
LMLLVLFSLL QVWKQRVQDE TRAELVGQLG NLRARLESEL NAVIHVTDGL VTYIMFNPDL
GETEFDAIAA MLMERRPGLI SHFTAAPDNV IRYLHPLEGN RAALGLDLMS HPEQSGSVLD
MMERRSTVLA GPWELVQGGL RLIIRTPIFV PAHVAGTEDD RYWGLVSIPV DMQRLYEAAG
LGYFERSMDI AIRGRDGLGA RGETFYGDPA LFRRDSLRQT VTMLGGEWEL AAEPSGGWPA
VTPVGGLWGL IWLITLLTGA LAWYLSLQGQ RLRQSEVKYR ALMENLSDGA CIVQDGWLRY
VNPRFRDIFG HDEELLLSHQ LSDFLVAEDR DQLARLMSRV IADPARPGPL ETELRIRTGD
AGHSYVRINL SAMAWEDGPA ILATVSDIDD RKRLANQLLD SHERLNAIIR ALPDIGFIID
DQGQYRDVFG GLDSQLYHRG QALIGKRLHE VLPLELADRF LSVVHKALET SSLQTLEYAL
SAEQISIPPK GGPDGTLWFE GRVMAMGARV FDRPAVIWLA MNVTARKRLE ESMRLNARVF
EDSNEGIFIT DAGNRIISAN TAFTRITGYE AAEVIGRNPG LLSSGMHDEA FYQSLWEQVL
LHGRWEGEIW NRRKDGRVYP QNLSISVVRD GEGRISHHIA IFSDITRRKE AEAQIRHMAL
HDNLTGLANR TLLRDRLTQA IEQARRDRNS LALLFIDLDD FKPVNDTHGH EAGDRVLKEV
AQRLRAAVRR VDTVARMGGD EFVILLQALE QEDMAIQVAE KIIDSLSRPI QLNGQTCLLG
ASVGIALHPR HGEDHDGLMR AADQALYQAK SAGKNRYQVA GY