| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1559 |
|---|
| Symbol | |
|---|
| ID | 7316183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1673473 |
|---|
| End bp | 1674582 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643616450 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_002513630 |
|---|
| Protein GI | 220934731 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.855984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG AAACTGACAC TCGCCACATG GCCCGGGCGC TGCAGCTGGC GCGGCGGGGT
CTGTACACCA CGGATCCCAA TCCGCGGGTG GGCTGTGTCA TGGTCCGCGA CGGGCAGGTG
CTGGGCGAGG GCTTTCATGT GCGCGCCGGC GAGCCCCATG CGGAGATCCT GGCCCTGCGC
CAGGCCGGCG AGGCCGCCCG GGGCGCCACG GTCTACGTGA CCCTGGAGCC CTGTGCCCAC
TTCGGCCGCA CACCGCCCTG CGCCGACGCG CTGATCCATG CGGGCGTGGC CCGGGTGGTG
GCCGCCATGG TGGACCCCAA TCCCCGGGTT GCAGGGCAGG GTCTGGCACG ACTGACCGCC
GCCGGCATAA CGACCGCCAG CGGCGTACTG GAGGCCGAGG CACGGGCGTT GAACCCGGGG
TTCATCAGCC GCATGGAGCA GGGCCGGCCT TATGTCCGGG TGAAGCTCGC CATGAGCCTG
GACGGGCGAA CCGCCATGGC GAGCGGGGAG AGCCGCTGGA TCACCGGCGA GGCCGCGCGC
CGGGACGTGC AGCGCCTGCG GGCCCGCGCC GGCGCGATCC TCACGGGCTC GGGCACCGTG
CTCGCCGACA ATCCGGGTCT GGATGTGCGG CTCTCTGCGC AGGAACTGGG CATCGAGGGG
CCTGTACGTC AGCCCCTGCG GGTGGTGCTG GACACACGGC TTGCCTGCAC GCCCGAGGCG
AAACTGTTCA CCACAGGCGG TCCGGCGCTG GTGCTGACAG CCGAGCAGGA CACTGCCCGC
TACACACAAC TTCAGGCGTG CGGCGCCGAG GTGGAGGCCG TGGCCTCCGC CCCCCGCGGA
CTGGATCTGC ACGCGGTCCT GGAACTGTTG GCCCGGCGCG GGATCAATGA GCTTCACGTC
GAAGCAGGCC CGATCCTGTG CGGTTCCCTG ATGCAGGCGG GCCTGGTGGA CGAACTGGTG
ATCTACATGG CCCCGCACCT GATGGGCAAC GATGCCCGGG GCCTGCTGAA CCTCGGACTC
GAACACATGG ACGAGCGGGT CCCACTCAGG ATCGAGGACA TCCGCGCCGT GGGCGGAGAC
TGGCGCATCG TGGCGCGTCC GACGGCATGA
|
|---|
| Protein sequence | MTTETDTRHM ARALQLARRG LYTTDPNPRV GCVMVRDGQV LGEGFHVRAG EPHAEILALR
QAGEAARGAT VYVTLEPCAH FGRTPPCADA LIHAGVARVV AAMVDPNPRV AGQGLARLTA
AGITTASGVL EAEARALNPG FISRMEQGRP YVRVKLAMSL DGRTAMASGE SRWITGEAAR
RDVQRLRARA GAILTGSGTV LADNPGLDVR LSAQELGIEG PVRQPLRVVL DTRLACTPEA
KLFTTGGPAL VLTAEQDTAR YTQLQACGAE VEAVASAPRG LDLHAVLELL ARRGINELHV
EAGPILCGSL MQAGLVDELV IYMAPHLMGN DARGLLNLGL EHMDERVPLR IEDIRAVGGD
WRIVARPTA
|
|---|
| |