| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1524 |
|---|
| Symbol | |
|---|
| ID | 7318011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1634268 |
|---|
| End bp | 1635149 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643616415 |
|---|
| Product | putative terpenoid synthase |
|---|
| Protein accession | YP_002513595 |
|---|
| Protein GI | 220934696 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGG AACAGTACTG CCAGGACAAG GCCGCGCGCA GCGGGTCCAG CTTTTACTAC
AGCTTCCTGT TCCTGCCCGA GCAACAGCGC CGGGCCATCA CTGCCCTGTA CGCCTTCTGC
CGAGAGGTGG ACGACGTGGT GGATGAATGC CAGGAGCCGG ACATCGCGCG CCGAAAACTG
GACTGGTGGC GGGAGGAGAT CGCTCGGGTG TTTGCCGGCA ACCCGAATCA CCCGGTGGGC
AAGGCCCTGC TGCCGGCCAT CGAACGCTAC AATCTACCGG AAGAGCATTT CCGGGAGATC
ATCGACGGCA TGCAGATGGA TCTGGACTAC GACGCCTACC CCACGTTCAC GGAGCTGTCC
CTGTACTGCT ACCGGGTGGC CTCGGTGGTG GGCCTGATGG CCGCGGAGAT CTTCGGCTAC
CAGGACCGCC AGACCACCCG CTACGCCCAT GACCTGGGCA TGGCCTTCCA GCTCACCAAC
ATCCTGCGCG ACGTCCACGA GGACGCCCTG CGCGGCCGGG TCTACATTCC CATGGACGAG
ATGCGCCGTT TCGGCGTCGA GCCCCGGGAA CTGCAGATGC CACAGGCCTC GGAGCACCTC
AAGTCCCTGT TTGAGTTCCA GGCCCGGCGG GCACGGGACT ATTACAAACG CGCCTTCGAG
CGCCTGCCCG AGGTGGACCG CCCCGCCCAG CGCAGCGGCA TCATCATGGC GGCCATCTAC
CAGACCCTGC TGGATGAGAT CGAGGCCGAT GGCTACCGGG TCCTGGAGCG ACGCATCCGG
CTCACGCCGA TCCGCAAGCT GTGGATCGCC TGGCGCACGG CGCGCCAGGA AAAGCGCCGT
GAAAAGCGTC ACCGGAAACC GCTAAAGGGC GCGTCATCAT GA
|
|---|
| Protein sequence | MTPEQYCQDK AARSGSSFYY SFLFLPEQQR RAITALYAFC REVDDVVDEC QEPDIARRKL
DWWREEIARV FAGNPNHPVG KALLPAIERY NLPEEHFREI IDGMQMDLDY DAYPTFTELS
LYCYRVASVV GLMAAEIFGY QDRQTTRYAH DLGMAFQLTN ILRDVHEDAL RGRVYIPMDE
MRRFGVEPRE LQMPQASEHL KSLFEFQARR ARDYYKRAFE RLPEVDRPAQ RSGIIMAAIY
QTLLDEIEAD GYRVLERRIR LTPIRKLWIA WRTARQEKRR EKRHRKPLKG ASS
|
|---|
| |