| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1407 |
|---|
| Symbol | |
|---|
| ID | 7315116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1505825 |
|---|
| End bp | 1508071 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643616297 |
|---|
| Product | penicillin-binding protein 1B |
|---|
| Protein accession | YP_002513479 |
|---|
| Protein GI | 220934580 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0297434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGTGG GCCTGCTGGG CCTGGGCGGC TACACCGCCT ACCTCGACTA CGAGATCCGC
AGCCAGTTCG AGGGCAAGCG CTGGTCCCTG CCGGCGCGGG TGTTCGCCCG GCCCCTGGAG
ATCTACCCGG GACGGGAGCT GGATCGCGCG CAGCTCACCC GGGAACTGGA GCTGCTGCAC
TACCGCCGCG GCGATGCCAT CCGCAGCGGC GAATTCCGGG AGCAGGGCGG GCGCCTGATC
CTCAGCACCC GGGGCTTCCC CTTTGCCGAC GGCGTCGAGC CGCCCCGGCG CCTGAGCGTG
GACCTGCGTG ACGGCCGGGT GGCCGCCGTG ACGGAACTGG AGACCGGCCG CCCCGCCGCC
CTGGTGCGCC TGGAGCCGGC CCTGATCGCC AACATCTACC CGCGCCACGG CGAGGACCGG
GTCCTGGTGC GTCTGGACGA GGTGCCGCCC CTGCTGGTCA GCGCGCTGAT CGCCGTGGAG
GACCGCAAGT TCTACGAGCA CCACGGCCTG GACTTCTCCG CCATCGCCCG CGCCGCCTGG
GCCAACCTGC GCGCCGGACG CACGGTGCAG GGTGGCAGCA CGCTTACCCA GCAGCTGGTG
AAGAACTACT TCCTCACCCA GGATCGGACC CTGCGGCGCA AGTTCAACGA GGCCATCATG
GCCCTGCTGC TGGAATGGCG CTACGAGAAG GACGAGATCC TGGAGGCCTA TCTCAACGAG
GTCTACCTGG GTCAGGACGG CGACCGGGCC ATCCACGGCT TCGGTCTGGC CAGCCAGTTC
TACTTCCAGC GGCGCCTGGA CGAGCTGCAT CCCGAACAGA TCGCCCTGCT GGTGGCCCTG
GTGCGCGGGC CTTCCTTCTA CGATCCCAGG CGCCGCGCCG AGCGCGCCCA GGCCCGGCGC
GACCTGGTGC TGGACATCCT CGAGGCCCAG GGCGGGCTGG AGCGGGACGT GCTCGCCCGC
GCCAAGGCGC GCCCCCTGGG CGTGGGCGCC CGGCCGCCCT CGGGCATCAC CCCGTTTCCC
GCCTTCCTGG ACCTGGTGCG CGAACAGCTG CGTCGGGACT ACCGGGAGCA GGACCTGCAG
ACCGAGGGCC TGCTCATCTT CACCACCCTG GACCCGAGCA TCCAGCTGGC CACCGAGGCC
GCCGTGGCCC GGCGCCTCGC CCAGATCGAG CGCGCCCGGG GCATCGAGGC AGGCAGCCTG
CAGGCGGGCG CCGTGGTCAG CGCCGTGGAC AACGGCGAGG TGCTCGCGGT GGTGGGCGAC
CGCAACCCGC GCAACGCCGG CTTCAACCGG GCGCTGAACG CCCGCCGCCC GGTGGGCTCC
CTGGTCAAAC CGGCGGTCTA CCTGGCCGCC CTGTCGCGCC CCCGCCAGTA CACCCTGGCC
ACCCTGCTGG ACGACGGCCC GCTGACCCTG ACCCTGGACG ACGGCACCGA GTGGAGCCCG
CGTAACTACG ACCGGGAGTA CCACGGCATG GTGACGGCCC TGGACGCCCT GGTGCACTCC
TACAACATCG CCACCGCGCG CCTGGGCCTG GAGGTGGGGC TCAATGCCGT GATCCAGCAG
ATGCAGCGCC TGGGCGTGAG CCGCAACCTG CGCCCCTATC CCTCCCTGCT GCTGGGGGCC
GTGGAGCTCA CGCCCCTGGA GATGACCCAC ATGTACCAGT CCCTGGCCGC GGGCGGTTTC
GAGACCCCGC CCCGGGCCAT CCGCGAGGTC ATGGACGCCA ACGGCCAGCT GCTCAACCGC
TATGCCCTGG ACCTGCGCCA GGCGGCCGAC CCGGCCGCCG TGTACCTGGT GACCGCCGCC
CTGCACGAGG TCACCCGGCG CGGCACCGGC GCGAGCCTGC GCGGCCTGCT GCCCGAGGAC
CTGCCGGTGG CGGGCAAGAC CGGCACCACC GACGACAACC GCGACGCCTG GTTCGCCGGC
TACGCCGGGG ACTTCCTGTC CGTGGTCTGG GTGGGCCGCG ACGACAACGC CCCGATGGGC
CTGACCGGCT CATCGGGTGC GCTGCCCGTG TGGGCGGATC TGATGAAGGA CATCAGCCGC
CGCGGCTTGG AGCCCATCCG GCCCGATGGC GTAGAATGGC TGCTGATCGA CCCCGCCAAC
GGCCTGCGTG CCGTGGAAGG CTGCGAGGGC GCCCAGTGGA TGCCGTTCAT CGAAGGTTCG
GCACCCGCGG GCATGTCTCC CTGCGCCGAG GGGGTCCCCG CCGCGGTGCG GCGATCCTTC
CGCTGGTTCA GAGGGCTGTT CGAGTAA
|
|---|
| Protein sequence | MLVGLLGLGG YTAYLDYEIR SQFEGKRWSL PARVFARPLE IYPGRELDRA QLTRELELLH
YRRGDAIRSG EFREQGGRLI LSTRGFPFAD GVEPPRRLSV DLRDGRVAAV TELETGRPAA
LVRLEPALIA NIYPRHGEDR VLVRLDEVPP LLVSALIAVE DRKFYEHHGL DFSAIARAAW
ANLRAGRTVQ GGSTLTQQLV KNYFLTQDRT LRRKFNEAIM ALLLEWRYEK DEILEAYLNE
VYLGQDGDRA IHGFGLASQF YFQRRLDELH PEQIALLVAL VRGPSFYDPR RRAERAQARR
DLVLDILEAQ GGLERDVLAR AKARPLGVGA RPPSGITPFP AFLDLVREQL RRDYREQDLQ
TEGLLIFTTL DPSIQLATEA AVARRLAQIE RARGIEAGSL QAGAVVSAVD NGEVLAVVGD
RNPRNAGFNR ALNARRPVGS LVKPAVYLAA LSRPRQYTLA TLLDDGPLTL TLDDGTEWSP
RNYDREYHGM VTALDALVHS YNIATARLGL EVGLNAVIQQ MQRLGVSRNL RPYPSLLLGA
VELTPLEMTH MYQSLAAGGF ETPPRAIREV MDANGQLLNR YALDLRQAAD PAAVYLVTAA
LHEVTRRGTG ASLRGLLPED LPVAGKTGTT DDNRDAWFAG YAGDFLSVVW VGRDDNAPMG
LTGSSGALPV WADLMKDISR RGLEPIRPDG VEWLLIDPAN GLRAVEGCEG AQWMPFIEGS
APAGMSPCAE GVPAAVRRSF RWFRGLFE
|
|---|
| |