Gene Tgr7_1150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_1150 
Symbol 
ID7315859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp1237516 
End bp1238646 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content68% 
IMG OID643616037 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_002513223 
Protein GI220934324 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGACA CCCTCGACCT CGCCCAGGAA CTCATCCGCC GCCGCTCCGT GACACCTGAG 
GATGCCGGCT GCCAGCAGCT CATCGCCGAG CGCCTGGCGC CGCTCGGCTT CGAGGCACAC
CACCTGCGCT TCGAGGACGT GGACAACCTC TGGCTGCGCC GGGGCAGCGA GGGGCCGGTG
CTGGCCTTCG CGGGCCACAC CGACGTGGTG CCCACCGGCC CCGTTGAGAA GTGGTCCTCG
GATCCCTTCC AGCCGCAGAT CCGCAACGGC CAGCTCTACG GCCGCGGCGC TGCGGACATG
AAGAGTTCCA TCGCGGCGTT TGTCATCGCC TGCGAGGCCT TTCTCAAGGA TCACCCGGAT
CACAAGGGCT CCATCGCCCT GCTCATCACC TCCGACGAGG AGGGCCCGTC GGTGAACGGC
ACGGTGAAGG TGGTGGAGTG GCTGGAGGCG CGAGGCGAGA AGATCACCTG GGCCCTGGTG
GGCGAACCCT CCAGTACCGA GCGCCTGGGT GACGTGATCA AGAACGGCCG CCGCGGCTCC
CTGTCGGGGG TGCTGCGTGT GCGCGGCCAG CAGGGCCACG TGGCCTATCC GCACCTGGCC
GACAACCCGG TGCACCGGGC CCTGCCGGCA CTCGCCGAAC TGGCGGCCAT CCAGTGGGAT
GAGGGCAATG AACACTTCCC GCCCACCTCC TTCCAGATCT CCAACATCCA CGCCGGCACC
GGTGCGGAGA ACGTCATCCC CGGCGAGCTG GAGGTGATGT TCAACCTGCG CTTCTCCACG
GAGCAGACCG ATGAAGGCAT CCGCACTCGC GTGCACGCGG TGCTCGATGC CCATGGCCTG
GACTATGAAC TCAGCTGGCG ACTCTCCGGC CACCCCTTCC TCACCGCCGA GGGGGAACTG
GTGGAGGCGG CCAGCGCCGC CATCCGCGAG GTCATGGGGC TCGACACAGA GCTCTCCACC
GCCGGCGGCA CCTCCGACGG GCGCTTCATC GCCCCCACCG GCGCCCAGGT GGTGGAACTG
GGGCCCTTGA ACGCCAGCAT CCACAAGATC GACGAACACG TGCGCATCGA GGATCTCGAC
GCCCTGTCAC GCATCTACAC CGGCATCCTC AAGCGCCTGC TGGTGGAGTG A
 
Protein sequence
MSDTLDLAQE LIRRRSVTPE DAGCQQLIAE RLAPLGFEAH HLRFEDVDNL WLRRGSEGPV 
LAFAGHTDVV PTGPVEKWSS DPFQPQIRNG QLYGRGAADM KSSIAAFVIA CEAFLKDHPD
HKGSIALLIT SDEEGPSVNG TVKVVEWLEA RGEKITWALV GEPSSTERLG DVIKNGRRGS
LSGVLRVRGQ QGHVAYPHLA DNPVHRALPA LAELAAIQWD EGNEHFPPTS FQISNIHAGT
GAENVIPGEL EVMFNLRFST EQTDEGIRTR VHAVLDAHGL DYELSWRLSG HPFLTAEGEL
VEAASAAIRE VMGLDTELST AGGTSDGRFI APTGAQVVEL GPLNASIHKI DEHVRIEDLD
ALSRIYTGIL KRLLVE