| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1114 |
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| Symbol | |
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| ID | 7315823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1199487 |
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| End bp | 1201193 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643616001 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_002513187 |
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| Protein GI | 220934288 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTG ATCTGCGCAT TCTCCTGATC GAGGACTCCG AGGACGACGC CGAGCTGCTC
CTGCGTGAGC TGCGAAAGGA CGGCATCCGA CCGGGACATG TACGTGTCGA CAGCGCCCCC
GCCCTGAGGG AGGCACTGCG GGAGAAAAGC TGGGACATTG TCATCACCGA CCACAACATG
CCTGGTTTCG GTTCCGCAGA GGCGATCGCG ATCATCAAGG ACACGGGCCT GGATCTGCCG
GTGATCATCG TCTCGGGCAG CATCGGCGAA GACATCGCCG TGGCCGCCAT GAAGGATGGC
GCCAACGATT ACATCATGAA GCACAACCTG GCCCGGCTGA GTCCGGCCAT CAAGCGGGAA
TTGCGTGAGA CCAGGAACCG GGAAGCCCAT CGCCGGGCAC AACAGACCAT CGAACACCTG
GCCTATCATG ACCCGCTCAC CGGTCTCGTC AACCGCAGGG AATTCGAGGC ACGCCTTCAC
CAGGCGCTGC GCACGGCCAG CGAACGTGAA CAACACGCGC TGCTGTACGT GGACCTGGAT
CAGTTCAAGA TCATCAACGA CACCTGTGGC CACGAGGCCG GCGACGGCAT GCTGCGCCAG
CTGTCCGTAC TGCTCAGGAC ACCGATACGT GACAGCGACA CCCTGGCACG CCTGGGCGGA
GACGAGTTCG GCGTGCTGCT CAGCGGCTGC AGACTCGATG AGGCGCAGCA GGTTGCCGGT
CGGATCGTGG ACCTGGTGCG TGATTTCCGC TACGTGTGGC GGGACAAGAG CTTCCTCATC
GGCGCCAGCA TCGGCCTGGT CATGCTCGAT GATGCGAACC TGCGCGCGTC CGACGTACTG
CGCATGGCCG ACATGGCCTG TTATGCCGCC AAGGACAGGG GCCGCGGCCG GGTCCATATC
TATCGCGCTG ACGATCAGGA ACTGCTGCAA CGCCACAACG AGATGCAGTG GGTGGGGCGT
CTGAACCAGG CACTGGAGGA GAACCGTTTC AGGCTGTATC GCCAGTGCAT CACGCCACTC
GGACCACACG GCTCATCCCA CTGCGAGATC CTGCTGCGCA TGCTCGACGA GCGGGGAGAA
CTCATACCGC CGGGTGCCTT CATACCCGCG GCAGAGCGCT ACAACCTCAT GCCGGCCCTG
GACCGCTGGG TCCTGTGCAA CGCATTTCAC TGGCTCGCCC GCTGCCGACG CCAGGGTGCA
CCGCTGAACA GCGAGATGTT TTTCTTCAAC CTCTCCGCCG CAACGATCAG CGATGAATCC
TTCTACGCCC ATGTCAGCCA TGCGCTGCAG GAACATGACC TGCCCCCTTC CATGGTCGGG
TTCGAGATCA CAGAAACCGC CGCCATCACC AACCTGGGTA GCGCCCTGAA ATTCATCGAG
CAAGTCAGGC AACTCGGTTG CCGGATTGCC CTGGATGACT TCGGCACCGG CATGAGTTCA
TTCTCCTACC TGAGGACTAT CCCCGCCGAC TTCATCAAGA TCGATGGCAG CTTCATCCGG
GACATGGACG AGGACGCGAT GAACCTGGCC ATCGTCGACG CCATCAACCG AATCGGACAT
GTCGCAGGGC TGAAGACCAT CGCGGAATTC GTGGAGACGC AGGCGATCAG AGAGCGCCTG
GTAGAGGTGG GCGTCGATTT CGCCCAGGGT TACGGCATCC AGCGGCCGAT CCCGCTGGAC
GCCGCACAAA GCATGCCGCC TGGCTGA
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| Protein sequence | MSSDLRILLI EDSEDDAELL LRELRKDGIR PGHVRVDSAP ALREALREKS WDIVITDHNM
PGFGSAEAIA IIKDTGLDLP VIIVSGSIGE DIAVAAMKDG ANDYIMKHNL ARLSPAIKRE
LRETRNREAH RRAQQTIEHL AYHDPLTGLV NRREFEARLH QALRTASERE QHALLYVDLD
QFKIINDTCG HEAGDGMLRQ LSVLLRTPIR DSDTLARLGG DEFGVLLSGC RLDEAQQVAG
RIVDLVRDFR YVWRDKSFLI GASIGLVMLD DANLRASDVL RMADMACYAA KDRGRGRVHI
YRADDQELLQ RHNEMQWVGR LNQALEENRF RLYRQCITPL GPHGSSHCEI LLRMLDERGE
LIPPGAFIPA AERYNLMPAL DRWVLCNAFH WLARCRRQGA PLNSEMFFFN LSAATISDES
FYAHVSHALQ EHDLPPSMVG FEITETAAIT NLGSALKFIE QVRQLGCRIA LDDFGTGMSS
FSYLRTIPAD FIKIDGSFIR DMDEDAMNLA IVDAINRIGH VAGLKTIAEF VETQAIRERL
VEVGVDFAQG YGIQRPIPLD AAQSMPPG
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