| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0890 |
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| Symbol | |
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| ID | 7315914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 958170 |
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| End bp | 960137 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643615770 |
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| Product | signal transduction protein containing a membrane domain an EAL and a GGDEF domain |
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| Protein accession | YP_002512968 |
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| Protein GI | 220934069 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.191465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGTAC GTTTCCCTGG CACCATCCGC AGTCTTCGCT CCCCGCTCGC CCGGGCCGGT
CTGTTATCAA GCCTCGTGCC CTGGGGACAG GCCCTGGGCG CGGACCTGTC CGGGCAGATC
CAGGGCACGG CCGACGTCTG GCTCTGGCCA CTGATCCTGG GCGGTTTCCT GGCCCTGCTG
TTCGCGAGCC TGGGCATCTA CAACCGCGCC CTGCGCCGCC AGGTGGCACA GCAGACCCGG
GCCTTGCGCG AGGCCAACAC CACCCTGCGC AGCGAGCGCG ATTTCTCCCA GTCCATCATC
CAGGCCTCGC CGGCCTTCTT CGTGGCCATC GACACCCGGC ACCGGGTGCG CATGATGAAC
CCGGCCATGC TGCGCGCCCT GGACCGCTCG GCCCGGGAGG TGCGCGACCG CCCCTTCGCG
GACCTGTGCG TACCCGCAGA CGAGCAGGAG GCCCTGCACG CGGTGTTCCA GCACATGCTG
CGCACCGGCC ACCCCATCCA GCACGAGAGC CACGTGGTGG CCCGGGATGG CGAACGCCTG
CTGGTGGAAT GGCATGGCAA CACCGTGCGC AACGGCCAGG GACAGGTGGA GTACTTCTTT
GCCCTGGGCC TGGACATCAC CGAGCGCCGC CGCACCCAGG CCCAGCTGGA GCACATCGCC
CACTACGACC TGCTCACCGG CCTGCCCAAC CGCACCCTGC TGCAGAACCG CATCTCCCAC
GCCCTGGACG TGGCCCGGCG CCGGGACCGG CAGGTGGCCA TCCTGTTCCT GGACCTGGAC
CGCTTCAAGG TGGTCAACGA CAGCCTGGGG CACGCCTACG GCGACGAGCT GCTGCGCCAG
GTGTCGGATC GACTGCGCCG GCGCCTGCGG GAGGAGGACA CCCTGGCCCG CTGGGGCGGC
GACGAGTTCA TCGTGCTGGT GGACGAGGTG GACGACCCCC AGGGTCTGTC CCTGCTGGCC
GAGGGCATCC TCGCCGAACT GGCCGAGCCC TACCGCCTGA GCAACGGACA GGAGGTGTTC
GTGGGTGGCA GCATCGGCAT CAGCCTCTAC CCCCAGGATG GCAGGAGCGC CGAGCAGCTG
ATCATGAAGG CGGACACCGC CATGTACCAG GCCAAGGACC AGGGCCGCTC CAACTACCAG
TTCTACACCA GCGCCCTGAC CCTGGCCGCC AACGACCGCC TGGCCCTGGA GACCAGCCTG
CGCCATGCCC TGGAGCGGGA GGAATTCACC CTGCACTACC AGCCCCGGGT GCGCACGCAG
GACGACGTCA TGATCGGCAT GGAGGCCCTG GTGCGCTGGC ATCATCCCGA CAAGGGCCTG
ACCGCGCCGG ACGCGTTCAT CCCCATGGCC GAGGAGACCG GACTGATCAC GCCGCTCGGC
CTGTGGGTGC TGCGCACCGC CTGCCGCCAG GCCCAGACCT GGATGCGGCT CTACGGCGAG
CCCATCCACA TGGCCGTGAA CCTGTCCATG CGCCAGCTGC GCCAGCCGGA CCTGGTCAGC
CAGATCGACG CCATCCTGCG CGACACGGGC CTGCCGGCCA GCAGCCTGGA ACTGGAGCTG
ACCGAATCGG TGCTCATGGC CGGCGACGGA CACACTCTCA CCGCCCTGGC GGAGCTCAAG
GCACTGGGCG TGCGCCTGGC CATCGACGAC TTCGGCACCG GCTACTCGTC GCTCGCCTAC
CTGAAACGCC TGCCCATCGA CGCCCTGAAG ATCGACCGCA GCTTCGTCTC TGACATCCCC
CACGACGCCA GCGACATGGC CATCGCCTCC ACCATCATCG CCATGGCCCG CACCCTGGGG
CTGGAGGTGG TGGCCGAGGG CGTGGAGACG CCAGAGCAGC TGGCCTTTCT CAAGAAAGAG
GGCTGCGACA GCTACCAGGG CTTCGGCTTC AGCCCGCCAG TGGATGCCCA AGCCATGACC
CTGTGGCTGG ATGGGCTCGC CCGCGAACAC CGCATCGCCC GGGCCTGA
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| Protein sequence | MPVRFPGTIR SLRSPLARAG LLSSLVPWGQ ALGADLSGQI QGTADVWLWP LILGGFLALL
FASLGIYNRA LRRQVAQQTR ALREANTTLR SERDFSQSII QASPAFFVAI DTRHRVRMMN
PAMLRALDRS AREVRDRPFA DLCVPADEQE ALHAVFQHML RTGHPIQHES HVVARDGERL
LVEWHGNTVR NGQGQVEYFF ALGLDITERR RTQAQLEHIA HYDLLTGLPN RTLLQNRISH
ALDVARRRDR QVAILFLDLD RFKVVNDSLG HAYGDELLRQ VSDRLRRRLR EEDTLARWGG
DEFIVLVDEV DDPQGLSLLA EGILAELAEP YRLSNGQEVF VGGSIGISLY PQDGRSAEQL
IMKADTAMYQ AKDQGRSNYQ FYTSALTLAA NDRLALETSL RHALEREEFT LHYQPRVRTQ
DDVMIGMEAL VRWHHPDKGL TAPDAFIPMA EETGLITPLG LWVLRTACRQ AQTWMRLYGE
PIHMAVNLSM RQLRQPDLVS QIDAILRDTG LPASSLELEL TESVLMAGDG HTLTALAELK
ALGVRLAIDD FGTGYSSLAY LKRLPIDALK IDRSFVSDIP HDASDMAIAS TIIAMARTLG
LEVVAEGVET PEQLAFLKKE GCDSYQGFGF SPPVDAQAMT LWLDGLAREH RIARA
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