Gene Tgr7_0832 details

Gene Information

• Locus tag: Tgr7_0832
• ID: 7315093
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. HL-EbGR7
• Kingdom: Bacteria
• Replicon accession: NC_011901
• Strand: -
• Start bp: 896844
• End bp: 898766
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 643615711
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002512910
• Protein GI: 220934011
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.111285
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCAGC CTGAGTCCTA TCCCCTGTTG TCCCGCATCG GGTCGCCCTC GGATCTGCGT 
GAACTGCCCG CAGCCGAACT CCCGGCCCTG GCGGGGGAAC TGCGCGCCTT CCTGCTGGAG 
TCGGTCTCCA GCACCGGCGG CCACCTGGCC TCCAACCTGG GCACGGTGGA GCTGACCATC 
GCCCTGCACT ACGTGTTCAA CACCCCCGAC GACCGCCTGG TCTGGGACGT GGGCCACCAG 
AGCTACCCCC ACAAGATCCT CACCGGCCGC CGCGAGGCCA TGCCCGGCCT GCGCAAGAAG 
GGCGGCCTGG CCGGTTTTCC CAAGCGCGCC GAGAGCCCCT ACGACACCTT CGGCGTGGGC 
CATTCCAGCA CCTCCATCAG CGCCGCCCTG GGGATGGCCC TGGCCGCGCG GCAGCTGGGC 
GAGGACCGCC ACGCGGTGGC CATCATCGGC GACGGTGCCA TGACCGCGGG CATGGCCTTC 
GAGGCCCTGA ACCACGCCGG CGACCAGAAG GCCAACCTGC TGGTGGTGCT CAACGACAAC 
GAGATGTCCA TCTCCCCCAA CGTGGGCGCC ATGAACAACT ACCTGGCGCG CCTGCTCTCG 
GGCAAGGTCT ATTCCACGGT GCGCGAGGGC AGCAAGCGGG TGCTGGACCA CATGCCCCCC 
ATGCGCGAGT TCATGCGCCG CGCCGAGGAG CACATGAAGG GCATGATCGT GCCCGGCACC 
CTGTTCGAGG AGCTGGGCTT CAACTACTAC GGGCCCATTG ACGGCCACGA CCTGCCGTCC 
CTGGTGAAGA CCCTGAAGAA CCTGCGCGCC CTGCCCGGCC CGCGCCTGCT GCACGTGGTC 
ACCCGCAAGG GCCACGGCTA CGCGCCCGCC GAGCAGGACC CCTGCGGCTA CCACGGCGTG 
GGGCAGTTCG ATCCCAGCCA GGGCCTAGCC GCCGGCAAGA CCCCCTCCAG CCCCAGCTAC 
ACCCAGGTGT TCGGCCAGTG GCTCTGCGAC ATGGCCGAGG CCGATCCGCG CCTGGTGGGC 
ATCACCCCGG CCATGCGCGA GGGCTCCGGG CTGGTGGAAT TCTCCCAGCG CTTCCCCGAG 
CGTTATCACG ACGTGGGCAT CGCCGAGCAG CACGCCCTGA CCGTGGCCGC CGGCATGGCC 
TGCGACGGGC TCAAGCCGGT GGTGGCCATC TACTCCACCT TCCTGCAGCG GGCCTACGAC 
CAGCTGATCC ACGACATCGC CATCCAGAAC CTGCCGGTGC TGCTGGCCAT CGACCGGGCC 
GGCGTGGTGG GGCCCGACGG CCCCACCCAC GCGGGCAGCT TCGACCTGAG CTACCTGCGC 
TGCGTACCCA ACCTGACCGT CATGGCCCCC GCCGACGAGG ACGAGTGCCG GCGCATGCTG 
AGCACCGGCT TTCACCTGGA CGGCCCGGCG GCGGTGCGCT ACCCCCGGGG CAAGGGGCCG 
GGCGCGGCCC TCGACCCGGG CCTTGACACC CTGCCCGTGG GCAAGGCGCA ACTGCGCCGC 
AAGGGCCGGG GTGTCGCCCT GCTGGCCTTC GGCGCCGTGC TGCCGGCGGC CCTGGCCGCG 
GCGGAACCCC TGGATGCCAC GGTGGTCAAC ATGCGCTTCG TCAAGCCCCT GGACGAGGCC 
CTGGTGCGGG AGATGGCCGA GGGTCACGAC CTGCTGGTGA CCCTGGAAGA CAACGTGGTG 
GCCGGCGGCG CCGGCAGCGC CGTGGCCGAG AGCCTGGCTG TCCAGGGCAT TACCGTGCCC 
CTGTTGCACC TGGGCCTGCC GGACCGTTTC CAGGAGCACG GCAGCCGGGA AGAACTGCTC 
TCCGAGGCCG GCCTGGACGC CGAGGGCATC CTCGCGGCCG TGCGCGCGCG GCTGAACGAT 
GTACCGTCCC GGTCCGGGCG TGACGATTGC CTGTCCGCGC CCACTCGGGT AATATCCAAG 
TAA 

 

Protein sequence

MSQPESYPLL SRIGSPSDLR ELPAAELPAL AGELRAFLLE SVSSTGGHLA SNLGTVELTI 
ALHYVFNTPD DRLVWDVGHQ SYPHKILTGR REAMPGLRKK GGLAGFPKRA ESPYDTFGVG 
HSSTSISAAL GMALAARQLG EDRHAVAIIG DGAMTAGMAF EALNHAGDQK ANLLVVLNDN 
EMSISPNVGA MNNYLARLLS GKVYSTVREG SKRVLDHMPP MREFMRRAEE HMKGMIVPGT 
LFEELGFNYY GPIDGHDLPS LVKTLKNLRA LPGPRLLHVV TRKGHGYAPA EQDPCGYHGV 
GQFDPSQGLA AGKTPSSPSY TQVFGQWLCD MAEADPRLVG ITPAMREGSG LVEFSQRFPE 
RYHDVGIAEQ HALTVAAGMA CDGLKPVVAI YSTFLQRAYD QLIHDIAIQN LPVLLAIDRA 
GVVGPDGPTH AGSFDLSYLR CVPNLTVMAP ADEDECRRML STGFHLDGPA AVRYPRGKGP 
GAALDPGLDT LPVGKAQLRR KGRGVALLAF GAVLPAALAA AEPLDATVVN MRFVKPLDEA 
LVREMAEGHD LLVTLEDNVV AGGAGSAVAE SLAVQGITVP LLHLGLPDRF QEHGSREELL 
SEAGLDAEGI LAAVRARLND VPSRSGRDDC LSAPTRVISK