| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0654 |
|---|
| Symbol | |
|---|
| ID | 7316068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 704697 |
|---|
| End bp | 706337 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643615535 |
|---|
| Product | Polypeptide-transport-associated domain protein ShlB-type |
|---|
| Protein accession | YP_002512734 |
|---|
| Protein GI | 220933835 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.745868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCC TTCCCCGCGC CGCGCGCAGG GCCCTGCTGC TGTTGTCCCT TCTGGCCATG
GCGCCGGTGT CGGCCCAGAC GCCACCGCTC ACGCCGGACA CCGATCCGGG ATTCCTGCTG
CGTCCCCTGG AACGGGAGCG GGAACGCCTC GAGGAACTGC GTCCCGAGGC CCCGGTGCCC
GCGGATCCGG TGATCATCCC TGAAGAAGCT CCCGGCGTGC GGCTGGAAGG CGGGCCCCGG
TTTCGCCTGG AGGGGGTGCG CTTCAACGAG TCCGAGTTTC TCAGCACCGA GACCCTGGCC
GAGGTGGCCG GCGGCTACGT GGGCCGTGAA GTGGACTTCG GTCTGCTGGG CGAGATGGTC
GAACGCATCA ATGCCATCTA CCAGGCACGG GGCCTGATCA CCGCACGGGC CATCCTGCCG
CCCCAGCGTA TCGAGCAGGG CGTGGTCACC GTGCAGCTGG TGGAAGGTCG GTTGGGACGC
CAGGAGGTCA GTGGTGCCAC CTACACCCGC GAGACGTACG TGCGCACCCG TATTCCCATG
GAACCGGGTG AGGTGGTGGA CCTGCCCCGT CTCAGGGAGG ACCTGGACTG GTTCAACCGC
ACCGGTGAAC TGCGCGCCCG CGCGGCGCTC CGGCCCGGTG AGGGATTCGG CGAGAGCGAT
GTGATCCTGC TGATAGAGGA GCCGCCCCGC CATCGCCTGC AGCTGTTCGC CGACAATCAG
GGCGTGAAGA GCACCGGCGA ATACCAGCTG GGTGCCTACT GGATCCTGTC CGGCCTGCTG
GGTCGGGATG ACCGGATGAG TGTCTATGGC GTGGTGGCCC AGGGCGCGTA CACCCTGAGA
GCGGACTACA GCGCGGCGAT CAATGCACGG GGAGGGCGCC TGGGCGGCGC CGTCTACATG
GGGGATATCG AGCTGGTGGA GGGTCCGTTC AAGGACCTGG ATGTCACCGG CGACTCCTTC
GGCTGGCAGC TGCAATACGA GCACCCCTGG ATGCGCACCC CGTCCTGGCG CCTGGACAGC
ATCCTGCGGG TCGGCGAGGC CAACTCGACC AGCGAGATCT CCGGTGTGAA GGTGAGTGAC
ACGGACATCA CCCGGGTGGT GGCCGGCTTG CGGGGGGGGT ATGTCTCGGG CATCGGCCAG
TGGAGTTTCG AGCAGAACAT CTCGTCGGGA CGCAGCACCA CGATCCTCGG TGACAGCCAG
AGTTATCTGA CCTATCCCGG TCAGCTGAGC TTCGCGCGTC CCGGTGGCAA CGGTCGAGTC
TGGCTGGGCA CCCTGGGCTG GCAGTTCACC GGTGAGGACA CCCTGCCTTC CGCAGACCTG
TTCCAGCTGG GCGGCCCCGG TACCGTGCGC GGCTATCCCA CCAGTGTCAT TGCCGGGGTG
CGGGGCTATT ACCTGAACAT CGAGATGCAC TGGCAGTGGA CCGAACGCTA TGCACCCTTC
CTGTTCCTGG ATCACGGCGC CGTCTACGGC GAGAGTCCCG AACAGGAGGA CATCACCGGC
GTGGGTGCCG GTCTCAATGC CCGCTTCGGT CCCCGCTGGC GGGGCGAGGC GGTGCTGGGT
CATGCCACGC GCAAGGTGAC CCCGGACCAG GACAGCATTC GGCTGGATCT GCGGCTGGTT
TATGATTTTC CGGGTCTGTG A
|
|---|
| Protein sequence | MNSLPRAARR ALLLLSLLAM APVSAQTPPL TPDTDPGFLL RPLERERERL EELRPEAPVP
ADPVIIPEEA PGVRLEGGPR FRLEGVRFNE SEFLSTETLA EVAGGYVGRE VDFGLLGEMV
ERINAIYQAR GLITARAILP PQRIEQGVVT VQLVEGRLGR QEVSGATYTR ETYVRTRIPM
EPGEVVDLPR LREDLDWFNR TGELRARAAL RPGEGFGESD VILLIEEPPR HRLQLFADNQ
GVKSTGEYQL GAYWILSGLL GRDDRMSVYG VVAQGAYTLR ADYSAAINAR GGRLGGAVYM
GDIELVEGPF KDLDVTGDSF GWQLQYEHPW MRTPSWRLDS ILRVGEANST SEISGVKVSD
TDITRVVAGL RGGYVSGIGQ WSFEQNISSG RSTTILGDSQ SYLTYPGQLS FARPGGNGRV
WLGTLGWQFT GEDTLPSADL FQLGGPGTVR GYPTSVIAGV RGYYLNIEMH WQWTERYAPF
LFLDHGAVYG ESPEQEDITG VGAGLNARFG PRWRGEAVLG HATRKVTPDQ DSIRLDLRLV
YDFPGL
|
|---|
| |