| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0227 |
|---|
| Symbol | |
|---|
| ID | 7316805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 246412 |
|---|
| End bp | 247626 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643615112 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_002512313 |
|---|
| Protein GI | 220933414 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCCT TTGAATACAC CGCCCTGAAC CCCAAAGGCC GCGAGGTCCG GGGTGTCCTG
GAAGGCGATA CGCCGCGCCA GGTGCGCCAG CAGCTGCGCG AGGGCGGGCT CACGCCGCTG
GAGGTGGAGG AGGTCAAGAG CCGGGAGGGG CGCCGCGTGC GCATGCCGGG CCTGGGGCGG
GGCATCGGCG CCATGGACCT GGCCCTGCTC ACCCGCCAGC TGGCCACCCT GGTGCGTTCC
GGCCTGCCCA TCGAGGAGGC CCTGGGCACG GTGGCGCGCC AGAGCGAGAA GCCGCGCATC
CGCAGTATGC TCATGGCGGT GCGAACCCGG GTGATGGAGG GTCACACCCT GGCCCGGGGC
CTGTCCGACT TCCCCCACGT GTTCCCCGAC ATCTACCGCA CCACCGTGGA GGCGGGCGAA
CAGTCCGGCC ATTTGGAAGT GGTGCTGGAG CGCCTGGCCG ACTACACGGA AAACCGCCAG
CAGATGCGCC AGAAGATCCA GCTGGCCCTG TTCTACCCCG CCATCCTCAC CGCCATGGCC
CTGTTGGTGA CCATCGCCCT GCTGGCCTAC GTGGTGCCGG AGGTCGTGCA GGTGTTCGAG
GGTATCGGCC AGGAACTGCC CTGGCTGACC CGCACCCTGA TCGCCGTGAG CGACGGCCTG
CGCGACTACG GCCTGTGGAT GCTGCTCGGC CTGGTGCTGG CCGGCATGGC CGTCGGCTGG
CTGCTCAAGA AGCCCGGACC GCGCACCGCC TGGCACCGGG TGATCCTGCG CATGCCGCTG
GCCGGTCGCA TGGCCCGGGG CATGAACACG GCCCGCTTCG CCCGCACCCT GTCCATCCTC
TCCGCCAGCG GCGTGTCCGT GCTGGAGGCC CTTCGCATCT CCGCCCAGGT GGTGGCCAGC
CTGCCCATGC GCGACGCCAT CCAGACCGTG GCCCAGCGGG TGCGCGAGGG CTCGGGCATC
GGCAATGCCC TGGAGCGCAC CGGCTACTTC CCGCCCATCA CCGTGCATCT CATCAAGAGC
GGCGAGGCCA GCGGCAGCCT GGACGCCATG CTGGAGCGCG CGGCGGTGAA CCAGGAACGG
GAACTGGAGG CGCGCATCGG CATGATCATG GGCATCCTGG AGCCGGTGTT GATCCTGGTC
ATGGGCCTGG TGGTGCTGGT GATCGTGCTG GCCATCCTGC TGCCCATCTT CGAACTCAAC
CAGCTGGTGA ACTGA
|
|---|
| Protein sequence | MPAFEYTALN PKGREVRGVL EGDTPRQVRQ QLREGGLTPL EVEEVKSREG RRVRMPGLGR
GIGAMDLALL TRQLATLVRS GLPIEEALGT VARQSEKPRI RSMLMAVRTR VMEGHTLARG
LSDFPHVFPD IYRTTVEAGE QSGHLEVVLE RLADYTENRQ QMRQKIQLAL FYPAILTAMA
LLVTIALLAY VVPEVVQVFE GIGQELPWLT RTLIAVSDGL RDYGLWMLLG LVLAGMAVGW
LLKKPGPRTA WHRVILRMPL AGRMARGMNT ARFARTLSIL SASGVSVLEA LRISAQVVAS
LPMRDAIQTV AQRVREGSGI GNALERTGYF PPITVHLIKS GEASGSLDAM LERAAVNQER
ELEARIGMIM GILEPVLILV MGLVVLVIVL AILLPIFELN QLVN
|
|---|
| |