| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0119 |
|---|
| Symbol | |
|---|
| ID | 7316125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 129104 |
|---|
| End bp | 129925 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643615008 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_002512209 |
|---|
| Protein GI | 220933310 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT ACGCCGTCAT CGGCCACCCC ATCGGCCACA GCAAGTCCCC GCGCATCCAT
GCCCTGTTTG CCGGGCAGAC CGGGCAGGAC ATGGCCTACG AGGCCGTGTT CGCGCCCCTG
GACGGGTTCG CCGACACGGT GCGTCGCCTG GTGGCCGAGG GCTACCGGGG CTTCAACGTC
ACCGTGCCCT TCAAGGGCGA GGCCTTCAAA CTGGCCGATG CGCTCACGGA CCGCGCTCGC
TGTGCGGGCG CGGTGAATAC GCTCAAGGTG CAGGACGACG GCACGCTGCT GGGCGAGAAC
ACCGACGGCG CGGGGCTGGT GACGGACCTG GTGAACAACC TGGGCGTGGC GATCGCCGGC
CGCGACCTGG TGGTGCTGGG GGCGGGCGGC GCGGTGCGCG GCGTGCTGGC GCCGCTGCTG
GCGCTCGGGC CCGCTTCACT GCATATCGCC AACCGCACCG GGGCCCGGGC CGAACAGCTG
GCGCGAGACT TCGCCGACCT GGGGCCGGTC ACCGGCGGGG ACCTGGACAG CCTCATGGGA
CGCCAGGCCC ACGTGCTGAT CAACGGCACC TCCGCCGGGT TGGATGACGA GGTGCCGCCC
CTGCCCGATG ACCTGCTCCA CGCTGATGGC GGCTGTTATG ACATGATGTA CGGAGACCGG
CCCACCGCCT TTCTGCGCTG GGCCGCTGCG CACGGTGCTG CCTGGACGGC TGATGGTCTG
GGCATGCTGG TGGAGCAGGC GGCGGAATCC TTTGCCCTCT GGCGTGGCGT GCGACCGCAG
ACCGGGCCGG TGATACAGAT CCTGCGCCCC GTTCAGCCCT GA
|
|---|
| Protein sequence | MDKYAVIGHP IGHSKSPRIH ALFAGQTGQD MAYEAVFAPL DGFADTVRRL VAEGYRGFNV
TVPFKGEAFK LADALTDRAR CAGAVNTLKV QDDGTLLGEN TDGAGLVTDL VNNLGVAIAG
RDLVVLGAGG AVRGVLAPLL ALGPASLHIA NRTGARAEQL ARDFADLGPV TGGDLDSLMG
RQAHVLINGT SAGLDDEVPP LPDDLLHADG GCYDMMYGDR PTAFLRWAAA HGAAWTADGL
GMLVEQAAES FALWRGVRPQ TGPVIQILRP VQP
|
|---|
| |