| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_0041 |
|---|
| Symbol | |
|---|
| ID | 7316691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 41562 |
|---|
| End bp | 42806 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643614931 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_002512132 |
|---|
| Protein GI | 220933233 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCATT TCCAGTATCG CGACGGTGTG CTGCACGCCG AGGAAGTCCC CCTGAGCCAG
ATCGCCGCCG CCCACGGCAC GCCCTGCTAC GTCTACTCGC GGGCCACCCT GGAGCGGCAC
TGGCGGGCCT TCGACACGGC CCTGGGCGAC CATCCGCATC TCATCTGTTA CGCGGTGAAG
GCCAACTCCA GCCTGGCGGT GCTGAACGTG CTGGCGCGCC TGGGTTCCGG GTTCGACATC
GTCTCCGTGG GCGAGCTGGA GCGGGTGCTG CGCGCCGGCG GTGAGGCATC GCGGGTGGTG
TTCTCCGGGG TGGGCAAGCG CGCCGACGAG ATGCGCCGGG CGCTCGAGGT GGGCATCCGC
TGTTTCAACG TGGAGTCCGA AGCGGAGCTG GCGCGCCTCA ATGGCGTGGC CGGCGAGCTG
GGCGTCGAGG CGCCGGTGTC CATCCGGGTG AACCCGGACG TGGATGCCAG GACCCATCCC
TACATCTCCA CGGGACTGAA GGAAAACAAG TTCGGCGTGG ACATCCGCGT CGCCCCGGCC
CTGTACCGCC AGGCCGCCGA CATGGCCCAC ATCCGGGTAG TGGGCGTGGA CTGCCACATC
GGCTCCCAGC TCACGGGCCT GAGCCCCTTC GTGGATGCCC TCAAGCGCGT GCTGGAGCTG
GCCCGCACCC TGGAGGCGGA CGGCATCGGC CTGGATCACC TGGACCTGGG CGGCGGGCTT
GGCATCCGCT ACCGGGACGA GGAACCGCCC CTGCCGGACG CCTATGCCCG CGCCCTGTTC
GAGGGCCTGG CCGACACCCG CTACGAGATC CTGCTGGAGC CGGGCCGGGC GATTGCCGGC
AACGCCGGCG TGCTGCTCAC CCGGGTGGAA TACCTCAAGC ACACCGAGCA CAAGGACTTC
GCCGTGGTGG ACGCCGCCAT GAACGACCTG ATCCGCCCGG CCCTCTACGG CGCCTGGCAG
GAGATCGTGC CGGTGGCGCC CCGCCTGGGC GAGTCGCGCA CCTACGACGT GGTGGGACCG
GTGTGCGAGA CCGGTGACTT CCTGGGCAAG GAGCGCGCCC TGGTGCTGGC CGAGGACGAC
CTGCTGGCGG TGCGCTCCGC CGGCGCCTAC GGCTTCACCA TGAGCTCCAA CTACAACACC
CGCCCCCGCG CCGCCGAGGT GATGGTGGAC GGCGAGCAGG TGCATCTGGT CAACCGCCGC
GAGAGCCTGG AAGAGCTCAT GGCGCGGGAG ACGCTGCTGC CGTAG
|
|---|
| Protein sequence | MDHFQYRDGV LHAEEVPLSQ IAAAHGTPCY VYSRATLERH WRAFDTALGD HPHLICYAVK
ANSSLAVLNV LARLGSGFDI VSVGELERVL RAGGEASRVV FSGVGKRADE MRRALEVGIR
CFNVESEAEL ARLNGVAGEL GVEAPVSIRV NPDVDARTHP YISTGLKENK FGVDIRVAPA
LYRQAADMAH IRVVGVDCHI GSQLTGLSPF VDALKRVLEL ARTLEADGIG LDHLDLGGGL
GIRYRDEEPP LPDAYARALF EGLADTRYEI LLEPGRAIAG NAGVLLTRVE YLKHTEHKDF
AVVDAAMNDL IRPALYGAWQ EIVPVAPRLG ESRTYDVVGP VCETGDFLGK ERALVLAEDD
LLAVRSAGAY GFTMSSNYNT RPRAAEVMVD GEQVHLVNRR ESLEELMARE TLLP
|
|---|
| |