| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_18610 |
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| Symbol | |
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| ID | 7312675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | - |
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| Start bp | 1983804 |
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| End bp | 1990637 |
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| Gene Length | 6834 bp |
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| Protein Length | 2277 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643612308 |
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| Product | YD repeat protein |
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| Protein accession | YP_002509605 |
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| Protein GI | 220932697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAAAC TTGTATTGGT ATCTATCATG TTAATTTTTA TTTTGTTATT TCAAATGTTT
TTTATTGTCT TTGATAGTGG AGTTATTTTT GCTAACAATG GACAAGATGA AAATGATGAA
GAAGAGGAAG ATGATGAAGA AAGTGAAGAA AATGAATGTG ATCATCCTGT TACAAGTACA
TACTATCATT GGGAATATAC CAGCAATAGT CACTGGCTCG AATGGGAAGT GTATTGTGTT
AATTGTGGTA AAACCCTGAG TACAAATTCC AGTTCACCAG AACCTCATAA TATTACTTCA
AGTTATAAAA CAAAGAACTC TTCTAAATCC AGGTGTACAC AGATAGTAAC AGAGTCGTGT
AGTACCTGTG GTTATACACA TACCTATGAA AAAACGTATA ATCATACAAG GGGTACAACT
TGTTCTAAAT GTGGTACATA TTATCCGACC CACGAAGAAG AGGCTGAACA GAAGACAGGA
GAAAGTAATG AAAAAAGTGG GGAAGGAGAA GATGAACTTG ATGAAGGTGA AGAAGCCAAT
GATAATGCTG ACCAGGAGAT AAATGATGGG GAACAGAGTA ATACTGATGC AAATAATGAA
TATGGAGACA CTGAGTCTGA CCTATCAGAT GCCGGAGAGG AAAATGATAA TGCAGAAACG
GATATTAATA ATGCAGATGA AAATATTGGT TCATCAAATG ATTGTACAGC AGAAGCTGAT
CAATATAATA CATCTGCTGA AGAGGGTATG GGTAATTCAG AATATTCACA GGGCGAATCA
TCAGATAATT TTGACGAAAC ATTAGCATGT GAAGAACAGG CTGAGGGCTA TGAACAGGAT
GTTAATGACA TTTACAATGA TTTAGAGGAA ACTGAAGACG GAAACACAGA CCTTATGGAG
GGAGAAAATA ATAGTGCAAA CAGTGATACA GCCGGGGATC CGGTTAGATA TACTACCGGT
GAATATGTAA GTAAGAGTAC TGATTTACAA ATTAATTCAG TTGAACCCCG GATAAAAGTA
GTACGCAGTT ACAGTAACTT TGATACAAGT AGTTTTTCTT TTGGTAGAGG CTGGAATTTT
AACTATGATA CCAGGATTAT AATTGGCATC AGGGCTAATT ATATTGAACA GCAGGAAGAA
TTACAGGAGC TTGCAGAATT AGTTGACGAA ACATACCAGG AAGCTGTAAT AGCATATCAG
GAAGCAATGG ATGCTGCATG TGAGTCAGTT GAATTTGCTA AGGAGGCAGT AGAAGATGCA
GAAAAGGCGG TTAATGCTGC CCGTGACGCA AAGGACTATG CTTTAACTGC CAAAAACCTG
GCTGAGAGTG GAAAAATAAA TGCCAGTGAG GCTAAATACT ATGCTGACTC TGCTTTTGAC
CATTTAAATA AATGCCTTGA ATATGCAGAT AACTCTATTC AATCAGGGAA AGAGGCTGAA
AACCAGGCAA AGTTTGCCAG AGAAAAAGCC ACAGAGGCCA GAAATATTGC TGATATAGCC
ATTGATTTGG CAGAAAGTGC TGTGTACCAT GCTAACCGGA GTGGTAAGCA GAGTGTTATT
GATGCTGCTT ATGCTGCCCT GAACAGGGCG AATACTTTGA AAACTAACGC GTTAAATGAA
ATAGATGAGG CAGACAATAA TATTGAAACA GCCAGAAAGA TTAAATCAGA TGCTCAAGAT
TTAAAAAATA AAGTAAACAA TTTAAACCTG GCAGATAAAA TTAGACAGGC TAAAAATACT
GCAGAAAATA ACTATAAAAC AGCTGAAAAA ACACTGGTAA TTGCCCGGGA TGTACTTGAA
CTGGCTGAAG ATACTTTTAA TAAAGTTAAT AACACACTGG TATTAGCGGA AGCCCGGCTT
AATGAAGCAA GTCAATGGAA AAAGGAACTT AATGACAATT ATACTGTAAT TGAAAATATC
GATAAAATAA ATAACAGGGT GCAGGAAATA GCAAGACAGG CATTATTAAA CAGGGAGTAT
TCAGAAGCAG GGCGTTATCG TAACCAGTAT AATGTTGACT GGAGTGTAAA CCCGGCAAGA
GATGAAATAG GTATCGGTAA AATTGTTTTA ATAGATGATA AGGGCACCCC TCATATCTAT
AAAATACTTT CAGAACCTGA CTTTGAGTCT AAAATTACAT TCCCTGATGG TTTAAAGAAC
TATTATCCAG AAGGCAGTTT AACAGAACCG GTAACTATAA CTGATGACAG GTTAGAAATA
TTACCTGATG GCAAATACCT GCTAACAAAG AAAGATAAAA CAACTTACCT TTATTCGTAT
TTTGGCAGGT TGCTTAAAAT TGAAGAACCA AATGGTAGAT ACCTTAAGTT TGGCTACAAC
GAAAACGAGC AGCTTGTGTC CATAGAGGAT ACATTCGGGC GGAAAGTAAA AATTGAACGG
GTTAACGGAA AAATTGTTAA AATAACCGAT CCGGTTGAAC GTGTTTATAC CTATGACTAT
GAAGGCAATA ACCTTGTAGC ATTTACTGAC CCTGAAGGGT ATACACGCCG CTATAGCTAT
AATGAGAACG GGATAACTGG CTTAACTTAC CCGGATGGTT CAGGCTGGAA ATATTATTAC
ACTGAATTAA ACGGTATAAA AGTCATTGAT TACCAGCAGG ATGCTGCAGG AAATATTATT
GATTTTGAAT ACTATCCCGG GACAGGGGAA ACAGTGGTAA TTAACAGGAA GGGAAATAAA
ACAACCTACC GGTATAATGA ACGACACCTG ACTGAAGAAG AGATCAATGC AAATTACCAG
AGTATTATTA AAAGGTATGA TAATAACAAT AACTTAGTAT CTATAACTAA CCAGCGGGGT
TATACAACGT CTTATACATA TGATAAAAAC AATAACATAA CAAGTGTAAC AGATGCTGCC
GGTTCAATCT ATTTTACCTA CAATGATTTT AACAAAATTA CAAGTATTAC AGATAAAAAC
GGATATACAA CCAATTTTTA CTATGATGAC CGGGGCAACC TGACCCAGAT CGTATATCCT
GATGGTTCAA ATAAACAGTA TATTTATAAT GACCTTGGTT TATTAGTTGT TGAAATAGAC
CAGCTTGGTA ACAGGATAAA CTATACTTAT GATGGTTATG GAAATATTAC AGAAAAGGTT
TATCCAGATG GGAGCAGGGA AAAGTATGAA TATGATAAGG TAGGAAGGTT AATTAAAAGG
ATCAAACCAG ATGGTGGACA AATAAGCTAC CATTATGATA ATAATGATAA TATAATCAGG
GTAGTTGATG AACTGGGTAA TGAAGAAACT TTTAAGTACA ACTCAAGGGG AAAAATAATT
GAAAAAATAG ACCCTCGGGG TAATGTAACA AGATATGAAT ATGATGACAG AAATAATTTA
AGCAAAATAA TAGATGCTGA AGGAAATATC AAAGAAATTT TCTATGATGA AGCAGAAAAT
ATGACCAGGA AGATACTGGC TGAAAATGTT AGCTATGTTT ACCGTTATGA TAACCTTGAT
AGGTTGATTA CAGCGACCCA GGTAGAAACA GGTATTACAA CTTCCTATGA ATATGACCCG
GTAGGGAACC TTATTGCTAT TACAGACGGT GAAGGGCGGA CAACCAGGTT TGACTATGAT
GGACTAAACC GGAGGGTAAG AGAGATAGAC CCGTTAAACA ATACTGTTGT ATACAGGTAT
TACCCTAATA ATCAGTTAAA ATCTATTACA GATAAAAACG GGAATACAAC CAACTTTAAA
TATGATTGTA TGGGAAGGCT GACCGAGGTT ATAAACCCAA TTGGTGAGAG GGTACAGTAT
AAGTACGATG CAGCTGGTAA CCTGGTAGCC GAAATTGATC CAATGGGGAA TACCACCCGC
TATCAATATG ACTGTATGAA TAGACTGGTT AAGGAAATAG ATCCTGCAGG AAATGAAATC
CAGTATGAGT ATGACCTGTC CGGAAACCTT ATTAAAGTTA CAGACCCTGA AGGAAATACA
ACTTCATATA CTTATGACCT GAAAGGAAGG GTTATTAAAG AAACCAATGC CCTGGGATAC
AGTAAGACAT ATGAATATGA CGCAGTTGGA AATTTAATAA CCTTCACCAA TGAGGCCGGA
GTAAAAACAA CATACAAATA TGACGGACTT AACAGGCTTG TTGAGATTAA GGACGCACTG
GGTAACAGTA CGAAAATTGG GTATACCCCA CTCGGGAAAA TAGCCTGGAG GGAAGATGCC
CTGGGCAACA GGACAGAATT TACCTATGAT TCTGCTGGAA GGCTTGTCAA AGAAACTGAC
CCTGAAGGCA ATACAGTTGT GTATACCTAT GATAAAGCAG GCAACCTGAT TAAGGTAACC
GATGAACTGG GCTATACTAC AAATTACTGC TATGATAAAC TCAATCGGTT GATAGAGGTC
GTGGATGCCC TGAATAATAA AGTGGAGTAC AGTTATGATC CCAGGGGTAA CCTGACCATG
ATGGTTAATG AAATGGGAAA TACCTATCAA TACCATTATG ATGCCCTGGA CAGGCTGGTT
AAAGAAATAA ATTATCAGGG GAAAGAACAG ACCTACAGCT ATGATGCCAA CGGCAACCTG
ATTGCTAAAA AGGACTTTAA CGGGAACACT ACAACCTATA ATTATGATGA ATTGAACAGG
CTACTGGAAG TAATATTTAA CGGCGGGAAC AAGAAGCGGT TTAGTTATAA CAGAAACGGG
ATGATGACCA GGGCCCAAAA TGACAACTTA CTTCAGAGGT ACTACTATGA TGGGCTATCA
AGGTTGATAA AGGTCGAGGT TGAAGATGAT GAAGGGGAAA ACTATAAGAT AGAGTATCAG
TATAATGAAC TTGGCCAGAA AACCAGGGTT ATCTATGATG ACAGTAATAA TTTAAAAGAC
AGGGTAACCG GGTATGAATA TGATGAATTA ATGAGATTGA GCAGGGTTGA GCTGCCTGAT
GGTGGTGAAA TAAAATATAG ATATGATAAG TTAAACAGGA TAATAACCAG GATAAATAAT
AACAGAACCG CGACCAGCTA TACTTATACC CCTGATGGGC AGGTTGAGAC CATTACCCAC
TGGAAAGGTT TTATAGGACA CAACCAGAAT ATAATCCAGT CCTATGGTTA TGTTTATAAT
GCCCGTGATG AGAGGGTATT ACAGGTAGAA GAAAACGGGG AGATAACAGC TTACCAGTAT
GACCCCGCAG GCAGGCTGGC AAAAGTTTAC TACCCCTTCA GTGACCGTAA GAAGATAGAG
GATTTAAAAG AAAGATTCTA TTACGGCCTT TTACCCGAAT GGCCGGAGCC CTATAAATAC
GGGCTTAATA TTGAAGAACC CCTTTCCTGG GACAAAGAAA ACAACCTTTA TAACCAGCTA
AATGAACTGA CCGGAAAGCT GGAAGGAAGC CTGGCAGGTA TGCCTGGAGT TGGTAACAGC
ACCCGGGGCC AGAAAGGTAA AGGCAGACTG CCGGAATTAA TAATCTCACA GGGTGAGGGA
AGTTTGAACT TCACAGATAG AATAGACTTA CCCTATGACG TAAGAAACAG AGTAGAGGAG
CTATACAGCA GGATAAAAAA TAACGGCTGG GGACTGGATA TATATGGTGA CAACTTCTGG
GTTGAAGAAT TTACCTATGA CCCGGCAGGT AATATTACCG AAAAGAGGAA CGGGTGGGGT
AAAATAGAAT ATAAGTATAA TGATGCCAAC CAGTTAGCAA AGGCCGGTAA CCGGCAGTAT
GAATATGACA GTAATGGTAA TCTCATCAGG GAAGAGCTGG GACACTATTA TGCCGAATAC
CACTATAATT ACGAAAACAG GCTAATAAAA GCAGTCAACA ACAGCCACCC CCATTTCCTG
GGAGGCAAAA GTCCCTTTAA AGGTTCAGTA AGTTATACCT ATGGACCTCT TGGCAGGAAG
GTTAAAAAGG TTACAGACCC ACAGCATGGA GCTAAAGTAG GTATAACAAA ATATATCTAT
GATGGAACGA GAACAAATGT ACTGGTTGAA TATGAGATAG AACGCTTTGG TGGGGACCAC
CCCGGAAACA ATAAACCTGG TAAAGGACAT AAGCATAACA ATAATCCATT TAACAATGCA
GGAAAAATAA ACCGGATTAA CGAATATTAC TATGGGAATG GTTTAATAGC CATGAATTAC
TTAAGCCACC CTGACAGGGG ACGAATCCAC TATGGTAATA ATGTATCCTA TTACCATAAA
GATGCCCTGG GATCCATAAT ATTAATGACA GGCAGGAACG GACAGGTAAT CGACAGGTAT
GAATATGATG CTTATGGAAA TCCCTACAGT GGCAGGTTTG AACAGGGTAA TAACATGAAC
TCATATGGAT TCACCGGACA GAGATATGAA GCCAGGCTTG GAGTCTACAC CTTTGCCTAC
AGGACATATA ACCCCAGGGT TATGAGGTGG ATAACTCCTG ATCCGGTAAG AGATGGGATG
AACTGGTATA CCTATGTAAA TGGGGATCCG GTAAATTTAT GGGATCCGCT GGGGTTGTGT
GATATTGATC CTGATAGCTG GAGAAATATA ATGAAGGAAC AACAGCCCAT GATGCGGGGT
GATGATGTAG AACAGGTACA AACCTTTCTA AACCAACAGG GGTATGATGT AACAGTTGAT
GGTATATTGG GCCCTGAGAC GGCAGGGGCA GTTAGAGACT ACCAGGAAGA TAAAGGTTTA
TCTGTAGATG GTGTTGTAGG GCCCAATACC CGGGAAGAGA TAAAAAAGGA TCTGGGGATA
GAGGATGTTA GGCATGAAAT ATATTTTAGT CACGATACAG ATAAAGTTTA CTGGACAGAT
AATACCGGAA AAATTATAAA ATCATGGCAA GCTAGTGATG ATATTATAGG ATGA
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| Protein sequence | MRKLVLVSIM LIFILLFQMF FIVFDSGVIF ANNGQDENDE EEEDDEESEE NECDHPVTST
YYHWEYTSNS HWLEWEVYCV NCGKTLSTNS SSPEPHNITS SYKTKNSSKS RCTQIVTESC
STCGYTHTYE KTYNHTRGTT CSKCGTYYPT HEEEAEQKTG ESNEKSGEGE DELDEGEEAN
DNADQEINDG EQSNTDANNE YGDTESDLSD AGEENDNAET DINNADENIG SSNDCTAEAD
QYNTSAEEGM GNSEYSQGES SDNFDETLAC EEQAEGYEQD VNDIYNDLEE TEDGNTDLME
GENNSANSDT AGDPVRYTTG EYVSKSTDLQ INSVEPRIKV VRSYSNFDTS SFSFGRGWNF
NYDTRIIIGI RANYIEQQEE LQELAELVDE TYQEAVIAYQ EAMDAACESV EFAKEAVEDA
EKAVNAARDA KDYALTAKNL AESGKINASE AKYYADSAFD HLNKCLEYAD NSIQSGKEAE
NQAKFAREKA TEARNIADIA IDLAESAVYH ANRSGKQSVI DAAYAALNRA NTLKTNALNE
IDEADNNIET ARKIKSDAQD LKNKVNNLNL ADKIRQAKNT AENNYKTAEK TLVIARDVLE
LAEDTFNKVN NTLVLAEARL NEASQWKKEL NDNYTVIENI DKINNRVQEI ARQALLNREY
SEAGRYRNQY NVDWSVNPAR DEIGIGKIVL IDDKGTPHIY KILSEPDFES KITFPDGLKN
YYPEGSLTEP VTITDDRLEI LPDGKYLLTK KDKTTYLYSY FGRLLKIEEP NGRYLKFGYN
ENEQLVSIED TFGRKVKIER VNGKIVKITD PVERVYTYDY EGNNLVAFTD PEGYTRRYSY
NENGITGLTY PDGSGWKYYY TELNGIKVID YQQDAAGNII DFEYYPGTGE TVVINRKGNK
TTYRYNERHL TEEEINANYQ SIIKRYDNNN NLVSITNQRG YTTSYTYDKN NNITSVTDAA
GSIYFTYNDF NKITSITDKN GYTTNFYYDD RGNLTQIVYP DGSNKQYIYN DLGLLVVEID
QLGNRINYTY DGYGNITEKV YPDGSREKYE YDKVGRLIKR IKPDGGQISY HYDNNDNIIR
VVDELGNEET FKYNSRGKII EKIDPRGNVT RYEYDDRNNL SKIIDAEGNI KEIFYDEAEN
MTRKILAENV SYVYRYDNLD RLITATQVET GITTSYEYDP VGNLIAITDG EGRTTRFDYD
GLNRRVREID PLNNTVVYRY YPNNQLKSIT DKNGNTTNFK YDCMGRLTEV INPIGERVQY
KYDAAGNLVA EIDPMGNTTR YQYDCMNRLV KEIDPAGNEI QYEYDLSGNL IKVTDPEGNT
TSYTYDLKGR VIKETNALGY SKTYEYDAVG NLITFTNEAG VKTTYKYDGL NRLVEIKDAL
GNSTKIGYTP LGKIAWREDA LGNRTEFTYD SAGRLVKETD PEGNTVVYTY DKAGNLIKVT
DELGYTTNYC YDKLNRLIEV VDALNNKVEY SYDPRGNLTM MVNEMGNTYQ YHYDALDRLV
KEINYQGKEQ TYSYDANGNL IAKKDFNGNT TTYNYDELNR LLEVIFNGGN KKRFSYNRNG
MMTRAQNDNL LQRYYYDGLS RLIKVEVEDD EGENYKIEYQ YNELGQKTRV IYDDSNNLKD
RVTGYEYDEL MRLSRVELPD GGEIKYRYDK LNRIITRINN NRTATSYTYT PDGQVETITH
WKGFIGHNQN IIQSYGYVYN ARDERVLQVE ENGEITAYQY DPAGRLAKVY YPFSDRKKIE
DLKERFYYGL LPEWPEPYKY GLNIEEPLSW DKENNLYNQL NELTGKLEGS LAGMPGVGNS
TRGQKGKGRL PELIISQGEG SLNFTDRIDL PYDVRNRVEE LYSRIKNNGW GLDIYGDNFW
VEEFTYDPAG NITEKRNGWG KIEYKYNDAN QLAKAGNRQY EYDSNGNLIR EELGHYYAEY
HYNYENRLIK AVNNSHPHFL GGKSPFKGSV SYTYGPLGRK VKKVTDPQHG AKVGITKYIY
DGTRTNVLVE YEIERFGGDH PGNNKPGKGH KHNNNPFNNA GKINRINEYY YGNGLIAMNY
LSHPDRGRIH YGNNVSYYHK DALGSIILMT GRNGQVIDRY EYDAYGNPYS GRFEQGNNMN
SYGFTGQRYE ARLGVYTFAY RTYNPRVMRW ITPDPVRDGM NWYTYVNGDP VNLWDPLGLC
DIDPDSWRNI MKEQQPMMRG DDVEQVQTFL NQQGYDVTVD GILGPETAGA VRDYQEDKGL
SVDGVVGPNT REEIKKDLGI EDVRHEIYFS HDTDKVYWTD NTGKIIKSWQ ASDDIIG
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