Gene Hore_18180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_18180 
Symbol 
ID7313816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp1939920 
End bp1941668 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content43% 
IMG OID643612265 
Productputative Chase2 sensor protein 
Protein accessionYP_002509562 
Protein GI220932654 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000385352 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGGTA AGAAAAACTT CAGGTTCAAA ATCAACATAT TTAATATAGC TATTATTATG 
ATTATAATTT TTTTATATTT TCTTAATGTT TTCTTACCCC TGGATAACAA ATTATTTGAT
ATTTTACTGG TGGGACGGTA TTTATTTAAG CCCCCTGAAG TGGATAATAT CGTTCTTGTG
GTCATAGATG ACAGGTCTTT ATCAGAACTC GGTAGCTGGC CCATTAGTCG TTCTTATTAT
GCCCGGGCTA TCAGGATGCT GGAAAAAGAG CGGGCCAGGG CTATTGGCCT GGATATTATC
CTGGAGGCTT CCTCTGGGCG GGAAGCGGAT GAAAAACTGG TTAAGGTCTT AAGCCAGTAT
GAGAATGTGG TTTTACCGGC AGTTGCCAGG GTAGGCCTTG TCAGGGGTTT AAAGACCCAG
CATTTAACTG TAAATAAAAT TAGTAAACCG TGGCCTCCTT TCAGGGAACG GTCAATCCAG
GGTCACATTA ACTTTATACC TGACCGTGAT GGGATAATAA GGCGATTGAG GCCGGTTATG
GATAAAGATG GAGAGAAGAT ATTTGCCTTC AGTGCGGAAC TGGCCCGTTT TTACAGCGAT
AACATATATA AGGAGCTTGA GGAACAGGCG GGGGGAATAT TAATTAATTT TCCAGGACCC
CCTGGAACCC TTCCACAGGT ATCTTTTATT GACCTTATAG AAGGTAATTA CAGGCCCGGT
TTTTTTAAGG ATAAACTGGT TATTATCGGT ACCCGGCTTA CAGGACTGGG TGACCGGTAC
ATGACCTCCT TTGCCCGGTA TGGTTATGTA ACCGGGGTTG AGATTCACGG CCAGGTATTG
TATAGTCTTA TTAACAACTC CTATATAACT GACTCACCTT TTATTGTCAA TATAATTTTA
ATGCTGTTAA CCGGACTAAT ATTATCCTTT ATATTTTTGA ATAACCCGCC GTCTCGGTCG
GGGTTAATAC TTTTTCTGGT TCTAGTACTA CTGTCAGTTC TCGGTTTTAT TCTCTTTTTC
CGTTACCGGT ATTACCTTCA CCTGTCAGGG CTTTATATAA CTGCCTTTAT GATGTATGTT
ACAGCCCTGG GGATGTGGTA TTTCTCCAGT GAAAGGGAAA GACAGAAGCT GGCCAGGACT
TTTTCCCGGT ATATATCACC TGAGGTCATG AAAGAACTTT TAAATAACCC GGGTCTGGTA
AACCCTGGTG GCCAGAGGAT GGAAGTTACA GTCCTCTTTG TTGATATCAG GAAATTTTCA
GATTATGCCC GAAAAAGGGA GCCTGAAGAG GTTGTTAAGG ACCTCAACAG GGCTTTTTCC
AGAATAAACC GTGTTATATT TAAATACCGT GGTACTCTGG ATAAATATCT CGGGGACGGC
CTGCTTGCCA TTTTTGGGGC ACCGGTTCCC GGGGATCATC ACCGGGAAAG GGCCCTTATG
GCCGCTATTG AAATTCTTGG AGAAGATATT TCCTTTGAGC TGGGGGTTGG TCTTAATACC
GGTCAGGTTG TGGTCGGTAA TATCGGTTCG GACATAAGGA TGGATTATAC GGTGGTGGGC
CATGTGGTTA ACCGGGCAGC CCGATTTGTT GAAATTGCCC GTCCCGGGGA GATAGTTATT
GGTAATAATA CTTATTCAGG TCTTCCGGAC AGGTTAAAAA ATATGGACTG GCAACGAGAT
GAATATAAAG ATAGTAATAT AGGGTCAGCT GAAAGGGTTT ACCGCCTGAT GAGGAGGGAA
CAGGTATGA
 
Protein sequence
MKGKKNFRFK INIFNIAIIM IIIFLYFLNV FLPLDNKLFD ILLVGRYLFK PPEVDNIVLV 
VIDDRSLSEL GSWPISRSYY ARAIRMLEKE RARAIGLDII LEASSGREAD EKLVKVLSQY
ENVVLPAVAR VGLVRGLKTQ HLTVNKISKP WPPFRERSIQ GHINFIPDRD GIIRRLRPVM
DKDGEKIFAF SAELARFYSD NIYKELEEQA GGILINFPGP PGTLPQVSFI DLIEGNYRPG
FFKDKLVIIG TRLTGLGDRY MTSFARYGYV TGVEIHGQVL YSLINNSYIT DSPFIVNIIL
MLLTGLILSF IFLNNPPSRS GLILFLVLVL LSVLGFILFF RYRYYLHLSG LYITAFMMYV
TALGMWYFSS ERERQKLART FSRYISPEVM KELLNNPGLV NPGGQRMEVT VLFVDIRKFS
DYARKREPEE VVKDLNRAFS RINRVIFKYR GTLDKYLGDG LLAIFGAPVP GDHHRERALM
AAIEILGEDI SFELGVGLNT GQVVVGNIGS DIRMDYTVVG HVVNRAARFV EIARPGEIVI
GNNTYSGLPD RLKNMDWQRD EYKDSNIGSA ERVYRLMRRE QV