| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_17610 |
|---|
| Symbol | |
|---|
| ID | 7313683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 1882922 |
|---|
| End bp | 1886044 |
|---|
| Gene Length | 3123 bp |
|---|
| Protein Length | 1040 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643612208 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_002509505 |
|---|
| Protein GI | 220932597 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TATGGAGCAA AAGGATTATT GATGTATATA TAATAAAAGA AGTCTTATAC
CCATTTTTAA TAGGTGTCAG TATTATCGGG GTTATCATGC TGAGTGGATT GTTACGCCAG
TTAAGTGATT TAATTATTAT TAAGAAAATC CCCGTGGCAG TGGTATTAAA ACTTCTTTTG
TATCAATTAC CTGAGATTAT TGTCCAGACC TTTCCTATTG CAATTTTATT TGCAACCATG
TCCGGGATGG GTCGGCTTAA CCGTGAAAAC GAATTTACGG CCCTGAGGAT GGGAGGAATC
AGCCTTTACC GGTTAATTCT ACCCCTGTTG ATTCTGGGAA TTGTTATCAG TGGTATGACT
TACCTACTAA ATGAGGAGAT AGTCCCCTGG ACCAAACACC GGGCCCAGAA TATTATAAGG
AAATCTGTTC TTAAAGAAGT CCCTCCAGAT ATAAAGGAAA ATGTCTTTTT TAAAGGCCCG
GACGGGCGTC TCTTTTACGT TGGCAGGTTT GACAAAGAGG ATAATATTAT GAAGAAAATA
GTGGTATATA CCTTTAAAGG AGACAATGGC TATCCCCTTA TTGTAACAGC CAATCTGGGT
GAAGTCTATA AGGAAAAATG GGTTTTAAAA AAGGGGTTTA TCCACCGTTA TAATGGTGAA
GGTCATCTTA CCATGGAGAC CCGGTTTGAT GTTATGGAGA TTAAAATAAA TACAGAGGTC
CACAACTTTT TTGCTGATCA AAAGACCCCT GATGAAATGA GTCGTGAAGA GCTTAAAAAG
GAGATAGACC TGTTTCAGAA CAGCGGGATC GATGTTCACT CTTTACTGGT CGATTACCAC
CTGAAACTAT CCATGCCTCT GGCTGCCCTG ATTTTCATAC TGATTGGAAC TCCCTTAAGC
CTGACCAGTA AGGACAGCCG GTCCTTTAGT ATTATTTTCA CAATTGTCGT TGTCTTTTTA
TATTATTTTG TCATGTCTTT GTCCCGGTCA TTCGGCCGGA ACGGAAGGCT TGATCCAGTG
CTGGCTGCCT GGCTCCCGAA TATAATATTC AGTATTATCG GGATTACCCT TCTCATCTGG
CGGGAGTCAT GGCGTAATCT TCTGAGGAAA TTGCTGGTGT TTTTACCGGT GTTTTTTATA
ATTATGTTAA TTTTTTTTCC TTCTCCAGCG TCTGCCGGGT CCCTTAAACT TAAAGCCGAT
AATTATAAAT ACCATGGTTT TGAGGAAAAG CTGGTCGAGA TTACCGGTGA TGTCAGTGGG
GAATTCGGCA AACTGTATCT TATAGCAGAC CGGGTTACCA TAAAACAAAA AGATGGTAGT
GAAGATATAG ATTCCAGTCC TCAGGAGGTT ATTGTCAGTC AGACCCGCTT TACTGGGTGT
GACCTTGATA AACCCCACTA TTTTTTCAGG GCCAGGGAGG TTATTATCTA CCCAGATGAC
CACCTGGAAG CAAAACATGT TACCTTCTGG GAGCTCAATG GTAAACTCCC TTTGTTTTAC
TGGCCTTATT TATATATTTC CCTTAAGGAA AAGACCAACC GGTTAATTCC CCGGGTTGGA
CATAATGCCC GACGGGGCTG GTTTGTTAAA GCAACCTATT ATTACTGGTA TAAAAAAGAA
CTCCCCGGAG AGCTTTATAT TGATTATTAT ACCCGTTCGG GTTATGCAGG AGGATTTAAA
CAGTATCTGG TCTATAGGCC AGATCTGAAA GCTTCGGTGT ATTTTTATTC CCAGGAAAAC
CGGGAAAAGA TTTCAGGGCT ATTTGACTGG CAGGGAGCCC TGGAATATTA TGATAATATC
GGCAGCTGGA AAACGGATAC TGATTTAAAG TATACAAGGT ATGACAATTA CCATTATACC
AGGGGACACA TCAATTTAAG TAATAATGAA GGTAAGGGAA AATTAAATCT TGCTTCAAGC
TTTGATTCCA GGGATTATTT TACCGGTAAC ACTGATGATG ATATAAACCT GGATGTTGAT
TTCTCCTATC GGTATAATTT CGGGAGTGGC TGGTATATCA ATCTTATATA TAACCGGGAC
TACCTGCTAA ACCCGGAAGA TGGTTTAAAA TCGAGATGGG GGAGTAAGAG TTATTTGCAG
AAAACCGGTA ATAAATATAA GATGAAACTT CTTTTAGAGA GATATGACCC TAAACTAAGT
GCTGAAGACG AAGTTTCTTT CTATCGCTGG CCAGAGCTTT CTTATAATTA CACGTTCGGG
GGTGGCTTTT CCGGTGAGGC TGTCTTCGGT AACTATTATG AAGACGATTC GGGGATAGAG
GGTTACCGGG CTTCAGGAGG GCTTAATTAT TATCGTAAAT GGTCACCGAT AAAAAAGACC
CGGGTTACTT TTAATCAGGG TATTAAGGGA CGTTATTACA GGGTTAAAAA CACCGTGGAA
GAAGATAATG ATGTGATTTA CTCCGGTTAC AGTGAGTTGC CCTACCTTTT TTCTTATGAT
AGCCGGATTG GGCTTAATAT TGACATTACT TCTCGTTTGG AACTGGATAA CACATATTCC
TATACCTGGC CCCTGGGGGC TACCCCCTTT AATTTTGACG AGGTAAAGCC CCGGGAAGAG
ATCAGGAATA AATTGACTTA TCAAAAGGGT GATTTTGATT TCGAGCTTAA AGGTGGCTTT
GATATATATA ATTACCGGTA TCTCCCCATA AGCGCCATTC TGGAATGGCA GATAACACCT
GACTGGGAGG TAAGTGCCGG AACAACCTAT GATTTAAATA ATAATTCTTA TGGTACTTTT
GCTCTCAAGA GTAAATATAG TGACGGTAGA TGGCTGAATA ATACAGCGTT GACCTTTGAT
CCTGATAATA ATAAGCTTAT GGCCTGGGAT AGTAAACTTA CTTATGAGCT GGAAGAAAAC
TGGTATGTTG AAGTCAATGC CAGTTTTGAT TATGTCAACA ATGATATAAA GCAGGCCAAC
CTGGCTGTAA AAAAGGACTT CCACTGCCGG GAATTATGGT TTGCCTATGA TTACCTCAAG
GAAGAATTTA CTGTTGAATA TAGACTGGAC CTCTTTCCGG ATCAGGGTTT TAAATTTGGT
ACCAGCCGCG AAGAATCATT TATGTTTGAT GTTGGTATCA AGGACCTGCT GGGTATAAAT
TAA
|
|---|
| Protein sequence | MKKLWSKRII DVYIIKEVLY PFLIGVSIIG VIMLSGLLRQ LSDLIIIKKI PVAVVLKLLL
YQLPEIIVQT FPIAILFATM SGMGRLNREN EFTALRMGGI SLYRLILPLL ILGIVISGMT
YLLNEEIVPW TKHRAQNIIR KSVLKEVPPD IKENVFFKGP DGRLFYVGRF DKEDNIMKKI
VVYTFKGDNG YPLIVTANLG EVYKEKWVLK KGFIHRYNGE GHLTMETRFD VMEIKINTEV
HNFFADQKTP DEMSREELKK EIDLFQNSGI DVHSLLVDYH LKLSMPLAAL IFILIGTPLS
LTSKDSRSFS IIFTIVVVFL YYFVMSLSRS FGRNGRLDPV LAAWLPNIIF SIIGITLLIW
RESWRNLLRK LLVFLPVFFI IMLIFFPSPA SAGSLKLKAD NYKYHGFEEK LVEITGDVSG
EFGKLYLIAD RVTIKQKDGS EDIDSSPQEV IVSQTRFTGC DLDKPHYFFR AREVIIYPDD
HLEAKHVTFW ELNGKLPLFY WPYLYISLKE KTNRLIPRVG HNARRGWFVK ATYYYWYKKE
LPGELYIDYY TRSGYAGGFK QYLVYRPDLK ASVYFYSQEN REKISGLFDW QGALEYYDNI
GSWKTDTDLK YTRYDNYHYT RGHINLSNNE GKGKLNLASS FDSRDYFTGN TDDDINLDVD
FSYRYNFGSG WYINLIYNRD YLLNPEDGLK SRWGSKSYLQ KTGNKYKMKL LLERYDPKLS
AEDEVSFYRW PELSYNYTFG GGFSGEAVFG NYYEDDSGIE GYRASGGLNY YRKWSPIKKT
RVTFNQGIKG RYYRVKNTVE EDNDVIYSGY SELPYLFSYD SRIGLNIDIT SRLELDNTYS
YTWPLGATPF NFDEVKPREE IRNKLTYQKG DFDFELKGGF DIYNYRYLPI SAILEWQITP
DWEVSAGTTY DLNNNSYGTF ALKSKYSDGR WLNNTALTFD PDNNKLMAWD SKLTYELEEN
WYVEVNASFD YVNNDIKQAN LAVKKDFHCR ELWFAYDYLK EEFTVEYRLD LFPDQGFKFG
TSREESFMFD VGIKDLLGIN
|
|---|
| |