Gene Hore_16490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_16490 
Symbol 
ID7313166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp1773135 
End bp1773758 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content38% 
IMG OID643612096 
ProductRNA polymerase factor sigma-70 
Protein accessionYP_002509393 
Protein GI220932485 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02859] RNA polymerase sigma-H factor
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000000101762 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGAATA AGCAGGGAGA AGAAGAGATT ATCAGGCAGG CCCAGAATCG AAACAGGCGT 
GCTATTGAAT ATTTGATTAA TTCCAATATG GATATAGTTT ATGCAAAGGC CAAATACTTT
TTTATCAAGG GGCTAGATAA AGATGATGTT ATTCAGGAAG GAATGGTTGG CCTGTTTAAG
GCGATCCGCG ATTTTAAATT TGAAAAAGGA GCCTCGTTCC GTGGCTTTGC CCAGCTATGT
GTCCATAGAC AGCTCGTTTC TGCTATTAAA AGAGCCAACA GACAAAAACA CATCCCCCTT
AACACCTCAA CTTCAATAGA CCGTTCTATT GATAACAGTG AAAATGGCAG GAGTTATAAC
GATATATTAC CCAATGAAGA TGAAAACCTT GAAGAGAAGT TTATATACCA GGAGCAGCTA
AAAATGATTT TTGAAGATAT TGAAAAGGAA TTAACTGAAC TGGAACGGGA AGTTTTTATG
CAATACCTGG CCAATAAGTC ATACCAGGAA ATTTCAAATC AGCTTGAAGT TAATCTTAAA
ACGGTTGATA ATGCCCTGCA ACGGGCCCGG AAAAAGATAG AACGGATTAA ACGTAATTAT
AATATTAATG ATTTGGTTGG TTAA
 
Protein sequence
MVNKQGEEEI IRQAQNRNRR AIEYLINSNM DIVYAKAKYF FIKGLDKDDV IQEGMVGLFK 
AIRDFKFEKG ASFRGFAQLC VHRQLVSAIK RANRQKHIPL NTSTSIDRSI DNSENGRSYN
DILPNEDENL EEKFIYQEQL KMIFEDIEKE LTELEREVFM QYLANKSYQE ISNQLEVNLK
TVDNALQRAR KKIERIKRNY NINDLVG