Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hore_15920 |
Symbol | |
ID | 7312628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothermothrix orenii H 168 |
Kingdom | Bacteria |
Replicon accession | NC_011899 |
Strand | - |
Start bp | 1705287 |
End bp | 1706252 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643612039 |
Product | Squalene synthase |
Protein accession | YP_002509336 |
Protein GI | 220932428 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR01559] farnesyl-diphosphate farnesyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.13397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGATT CCTTAAAATT TTGCAAAAAA ATGCTGCCAA AGGTTTCAAG AAGTTTTGCC CTTACCATAC CATTACTTGA TGATAAGCTT TATATGCCTG TTTTGACTGT ATACCTTCAG GATAGATTAC TGGATAATTT TGAAGATGAA GTTAAGGGGA TAGATATTGA TACCAGAAAA GATTTAATGG ATAGTGTAGT TGCCCTTTTT GACCCGGATA ATGAGGGAAC AAATTATATT TGCAACCGGT TAAAGGGCTA TTCTGACTAT ATTCCTGATA ATGATTTACA GGCCTTGACC GAAGGGTGCC ATTTGTTAAA AGAAGTATAC CAGAATTTAC CCCATAAGGT TCAGAGGCTA TCCTTTAAAT GGTTAAATGA GATGAATGAG GGAATGAAAA AATACTTAAC TCTCAAGATT AAAACCTTTG AAGAACTTGA TGAATATTGT TATTATGTAG CCGGTACAGT TGGAGGATTT TTAACTGAAC TGGTACTCCT TTACGGTGAT ATCCATGATC ATAAACAGAA GGAAGATCTC TTAGAAAATT TCACAGAGGC CGGGTTGTTT CTGCAGAAAA TAAATATAAT CAGGGATATA AAAATAGATT TAGAGGAACG GAACAAATCT TTCTGGCCCA TGGAAGAACT GGGATTATCG GATGAAAAAA TTTTAAATCC TGATTATAAA GAAGATGCCA GCCGTGCCCT CAGGGTAATG CTTTCTAATG CAAAGGGGCA TATTGAAGGA CTGGCTACAT ACTTTGAAGC CATACCTGAT AATCTGCCGG GTTACAGGAA ATTTTTCAGT GTTAATAATG CACTGGGAAT AGCTACCCTC GAGGAACTCG AAGGAAACCT TAAACTCTTT TACGGACGGG GCAAGGTGAA AGTCAGTAAA ATGAAATTCC TGAAAATACT AAATGATCCT GTTAAATTCT TCAGACAGAT GGTAATAAGA TATTAG
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Protein sequence | MVDSLKFCKK MLPKVSRSFA LTIPLLDDKL YMPVLTVYLQ DRLLDNFEDE VKGIDIDTRK DLMDSVVALF DPDNEGTNYI CNRLKGYSDY IPDNDLQALT EGCHLLKEVY QNLPHKVQRL SFKWLNEMNE GMKKYLTLKI KTFEELDEYC YYVAGTVGGF LTELVLLYGD IHDHKQKEDL LENFTEAGLF LQKINIIRDI KIDLEERNKS FWPMEELGLS DEKILNPDYK EDASRALRVM LSNAKGHIEG LATYFEAIPD NLPGYRKFFS VNNALGIATL EELEGNLKLF YGRGKVKVSK MKFLKILNDP VKFFRQMVIR Y
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