| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_15730 |
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| Symbol | |
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| ID | 7312609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | - |
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| Start bp | 1684322 |
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| End bp | 1686442 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643612020 |
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| Product | ribonuclease R |
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| Protein accession | YP_002509317 |
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| Protein GI | 220932409 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00000333488 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCTA GAGATAAAAT TATGGAATTT ATGGCCGATA AGGCCGAACG GCCTATGTCG
GCCGCCGAAT TAATGAAAGT ATTTAAAATT GAAAAGGATC AGAAGGGGAT ATTTATTAAC
CTTTTAAAAA AACTGGTTAA AGAGGGTCTT CTTTTTAAAA CCCAGGATGG TAAATACGGT
ATTCCCGAGA AAATGGACCT GATTCCCGGT CGTATTGAGG GTAACCCCAG GGGATTTGCG
TTTTTAATCC CTGATGACCC GACCCGGGAT GATATATTTA TTAGCCTTGA AAATCTAAAA
GGGGCCATGC ATAATGACCG GGTCTTTGTC AGACTTCTTT CAAGGCAAAA GGGTAAAAAC
AGAGAGGGAG AAGTTGTAAA AATCATAGAA CGGGCCAACC ACCAGGTGGT CGGCAACCTG
GAGAAAAGCA AGTACTTTGG CTTTGTAGTC CCTGATAATA AAAGAATTTT TTATGATGTT
TTTATTCCGA AAGAGGAATT AAACGGGGCC AGGCAAAACC AGAAAGTGGT TGCTGAAATA
ACCAGATGGC CTGAAAAAAA GAGAAACCCT GAAGGTAAGA TAATTAAAAT CCTGGGCTCC
CGGGGAGAAC GGGGAGTAGA CATAGAGGGG ATAATTTATC AGCTGGGTCT TCCCCAGGAG
TTTGATTATG AGGTCCTTGA GGAAGCAAAG TCTATTCCCC TTGAAATAAG TAAAGGTGAC
TTAAAGGGAA GAAGGGACCT TAGAGCTATG CCCATGGTTA CAATTGACGG GGCTGATGCT
AAGGACCTTG ATGATGCTGT ATCCATTGAA GAGGTGGATG ATAACCAGGT ACGCCTGGGG
GTCCATATTG CCGATGTCTC CCATTATGTA AAAGAAGATA GTGCCCTTGA TCGGGAGGCT
CTGAAGAGGG GAACCAGTAT TTATCTGGTG GACCGGGTTA TTCCGATGCT TCCTGAGAGG
CTTTCCAATG GTATCTGTAG CCTTAACCCC AATCAGGACC GGTTAACCAT GTCGGTCTTT
ATTACTTATC AGCTGGAACC CTTTAAACTG ATGGAGTATG AGATCGTTCC CAGTGTTATC
AAAACCAATT ACCGTTTAAC CTATGATGAG GTCAGAGAAA TCCTTGTTCA TAAAAATAAA
GCGGCAATTC AAAAATACAG GGATTTTGTT CCCTATTTAA AGTTAATGAA TAAGCTCAGG
AAAAGATTAA GGGAAGAAAG GGTAGCCCGG GGTAGCATTG ATTTTGATAT GCCCGAGGTA
AAGGTTATCC TTAATGAAGA TGGTAAGCCG GTTGATATTA TAAACAGAGT TCATGGTATT
CCTGAACAGC TTATTGAGGA ATTTATGATT GCAGCCAATC GGGTAGTTGC TGAAGATATG
TACTGGCGAC AGATACCCTT TATCTACAGG GTTCATGATC AGCCTGATCA CGGCAGGATG
GCTGACTTTA ATGAATTTAT CCATAATTTT GGCTACCATT TAAAGGGGGT TAATAATGAG
ATACACCCCC GGGAATTACA GGAACTGCTT CAACTGGTGG AAGGGAGACC GGAAGAACGC
TTGATTACCA GAATACTTTT AAGGTCCATG AAACAGGCAG TCTACTCAGA CCAGAATATT
GGCCATTTTG GACTGGCTCT CGATTATTAT ACCCACTTTA CATCCCCAAT AAGGCGGTAT
CCCGACCTTA TGATTCACCG GATTATTAAA GAGGTTATTA AAAAAGGTTA TCTACCAGCC
CGGAGGCAGG AAGAACTGGA AGAGAAATTA TTTGAAGTTG CTGAACACAG CTCCCTCCAG
GAAAGAAAAG CCATGGAAGC TGAACGGGAC TCTGTTGATT TGAAGAAGGT TGAATATATG
AAGGATAAAA CTGGAGAAGA GTATGAAGGT ATTATTAACG GGGTTACCAA TTTTGGCTTC
TTTGTTGAAC TGGATAATAC TGTTGAGGGG CTTATCCATG TTGAAAATCT GGAGGATGAT
TACTATCATT ATGTGGAAGA ACAGCATGCT TTAATTGGTG AGAGGACCCG GAAGACTTAC
CGGTTTGGTG ACAGGGTAAG GGTCAGGGTT GAACGGGTCA ATCTAGATGA AAGACAGATA
GATTTTAGCC TCATCGAGTA G
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| Protein sequence | MSARDKIMEF MADKAERPMS AAELMKVFKI EKDQKGIFIN LLKKLVKEGL LFKTQDGKYG
IPEKMDLIPG RIEGNPRGFA FLIPDDPTRD DIFISLENLK GAMHNDRVFV RLLSRQKGKN
REGEVVKIIE RANHQVVGNL EKSKYFGFVV PDNKRIFYDV FIPKEELNGA RQNQKVVAEI
TRWPEKKRNP EGKIIKILGS RGERGVDIEG IIYQLGLPQE FDYEVLEEAK SIPLEISKGD
LKGRRDLRAM PMVTIDGADA KDLDDAVSIE EVDDNQVRLG VHIADVSHYV KEDSALDREA
LKRGTSIYLV DRVIPMLPER LSNGICSLNP NQDRLTMSVF ITYQLEPFKL MEYEIVPSVI
KTNYRLTYDE VREILVHKNK AAIQKYRDFV PYLKLMNKLR KRLREERVAR GSIDFDMPEV
KVILNEDGKP VDIINRVHGI PEQLIEEFMI AANRVVAEDM YWRQIPFIYR VHDQPDHGRM
ADFNEFIHNF GYHLKGVNNE IHPRELQELL QLVEGRPEER LITRILLRSM KQAVYSDQNI
GHFGLALDYY THFTSPIRRY PDLMIHRIIK EVIKKGYLPA RRQEELEEKL FEVAEHSSLQ
ERKAMEAERD SVDLKKVEYM KDKTGEEYEG IINGVTNFGF FVELDNTVEG LIHVENLEDD
YYHYVEEQHA LIGERTRKTY RFGDRVRVRV ERVNLDERQI DFSLIE
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