Gene Hore_07960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_07960 
Symbol 
ID7314783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp856986 
End bp857672 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content41% 
IMG OID643611227 
Productpolysaccharide deacetylase 
Protein accessionYP_002508548 
Protein GI220931640 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR02873] probable sporulation protein, polysaccharide deacetylase family 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATAAAAA AATATGTTGT GGTTATTGCC TTATTTATTG GAATTGTAGC CGGTATGGCC 
CGGCATGAAT TAACCATGCC AGTTGTTAGC AGGCCAGATA GTCCCTTTTA CCATGGTGTC
AGGGGAAGAA ATCAGGTAGC TATTACCGTT AATGTGGACT GGGGGGAAAA ATACCTTCCG
GGTATGTTGA GGATATTACA TGAGAACCAG GTAAAAGTAA CTTTTTTTGT GACAGGAAAA
TGGGCCCGAA AATGTCCTGA TCTCCTGCAG GAAATGGCTG CAATGGGACA TGAAATTGGG
AATCATGGAT ATAACCATGC CCACCCGAAG CAGCTCAGCA ATGAGGCTTT GGCAAAGTTA
ATTAAGGATA ATGAAGAATT AATATACAAG GTAACCGGTC AAAGAACAAA GCTTTTTGCC
CCACCATATG GTGAAGTTGA TTCCAGGATA ACAAAGGTTG CCAGCAAGCT GGGTTATGAT
ACCATAATGT GGTCAGCTGA TACAGTTGAC TGGCAAAGGC CTTCACCGGA TATCATTGTG
CAAAGAGTAA TGGCGAAAAT TGACGATGGT GGTATAATTC TGATGCATCC AACTGAACCA
ACTCTTTATG CCCTTGAAGA TATAATTAAT AATCTGAGAC AGAGAGGATA TGAGATAGTA
ACCGTATCTG AATTAATATC AAAGTAA
 
Protein sequence
MIKKYVVVIA LFIGIVAGMA RHELTMPVVS RPDSPFYHGV RGRNQVAITV NVDWGEKYLP 
GMLRILHENQ VKVTFFVTGK WARKCPDLLQ EMAAMGHEIG NHGYNHAHPK QLSNEALAKL
IKDNEELIYK VTGQRTKLFA PPYGEVDSRI TKVASKLGYD TIMWSADTVD WQRPSPDIIV
QRVMAKIDDG GIILMHPTEP TLYALEDIIN NLRQRGYEIV TVSELISK