Gene Hore_07760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_07760 
Symbol 
ID7314763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand+ 
Start bp831514 
End bp832563 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content39% 
IMG OID643611207 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_002508528 
Protein GI220931620 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones60 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACGAA AAAGTCGAAA AATATATTAT GGCAATATTC CGGTAGGTGG GGATTCCCCA 
ATTACCGTGC AATCTATGAC AAATACAAAA ACCGCTGATG TCAACGCTAC AGTTAAACAG 
ATAAAAAGGC TTGAAAAAGC AGGATGTGAA ATAATAAGGG TTGCCGTTCC CGATATGGAA 
TCTGCCCGGA AGCTTTCATT GATAAAAAAG AGGATTAGTA TACCCCTTAT AGCTGATATT 
CATTTTGATT ATAGACTGGC CCTGGAAGCT ATACATCAGG GGGTTGATGG TATAAGAATA 
AACCCCGGTA ATATTGGGAG TGAGGAGAAG GTAGTTAAAG TCATTGAGGC TGCTAAAACG 
GCCGGTATCC CCCTCAGAAT AGGAGTAAAT TCTGGGTCTA TTGAAAAATC ATTAATTGAA 
AAATACGGGG GGCCCACAGC AGAAGCAATG GTAGAAAGTG CCTTAAAACA TGTTTACATC 
CTTGAAAAAC ATAGTTTTTA TGATATTATA ATTTCCTTAA AATCTACTGA TATCTGGACT 
ACTGTTGAGT CCTATCATTT AATGGCTAAA AAGGTTGACT ATCCCTTCCA TATAGGTATT 
ACTGAAGCTG GAACACCCTG GTCGGGTACA ATCAAATCAT CGATTGGCAT TGGAGCCCTT 
TTATTAGAGG GACTGGGTGA TACCCTCAGG GTTTCCCTGA CCGGAGACCC GGTGGAAGAA 
GTCAGGGTCG GCTGGCAGAT TTTAAAATTA TTAAACTTAA GAAAGAGTGG TCCTGTTGTT 
ATTTCCTGTC CTACCTGTGG CCGGACCGAG ATTGATTTAA TAAAACTTGC TGAAGAGGTA 
GAAAAAAAGG TAAGTTCCCT GAAAAAACCC CTGACGATTG CAGTTATGGG TTGCGCCGTT 
AACGGACCCG GTGAAGCTAA AGATGCCGAT ATAGGTATTG CCGGTGGTAA AGGGGAAGGA 
ATTATATTTA AAAAGGGTAA ATTAATAAAA AAAGTTAAGG AAGATGAACT ATTAGATTGT 
TTGCTTGAAG AAATAAATAA AATAAGATAA
 
Protein sequence
MRRKSRKIYY GNIPVGGDSP ITVQSMTNTK TADVNATVKQ IKRLEKAGCE IIRVAVPDME 
SARKLSLIKK RISIPLIADI HFDYRLALEA IHQGVDGIRI NPGNIGSEEK VVKVIEAAKT 
AGIPLRIGVN SGSIEKSLIE KYGGPTAEAM VESALKHVYI LEKHSFYDII ISLKSTDIWT 
TVESYHLMAK KVDYPFHIGI TEAGTPWSGT IKSSIGIGAL LLEGLGDTLR VSLTGDPVEE 
VRVGWQILKL LNLRKSGPVV ISCPTCGRTE IDLIKLAEEV EKKVSSLKKP LTIAVMGCAV 
NGPGEAKDAD IGIAGGKGEG IIFKKGKLIK KVKEDELLDC LLEEINKIR