Gene Hore_06720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_06720 
Symbol 
ID7312907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp728887 
End bp730632 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content39% 
IMG OID643611103 
Productsigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002508424 
Protein GI220931516 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAA AGGTTAATTT TAAACAATTA AGTGAATTAA ACCGGAAGAC AGATGTTATA 
TTAAATTCAA CTCATGATGG CCTTATATCT ATTGGAAAAG ATTATAAAGT TGAGCTCTTT
AATAGAGCAG CTGAAAAAAT ACTGGGTATT AAAAAAGATA GAGTTCTTGG CAAAGATGTA
AGAGAAGTAA TTCCTAACAC AAGGCTTCAT ATTGTTCTTA ATAAGGGTGA GGCGGAACTA
AATAAAATTC AACATGCCGG TGATATTACT ATTATTACTA ACCGGGTTCC TGTATATGAT
GAACAGGGAA ATATAATTGG GGCGGTAGCT GTTTTCAGGG ATATTACTGA AGTCAAAAAA
CTGGCAGAAG AAATTACCAA TTTGAAAGAG ATGAGGACCC TACTGGAAGC TATAATAAAT
GCTACTCAGG ATGCTATTTC AGTAGTTGAT GAAAAAGGAA TAGGAATATT GATTAATCCA
GCCTATACCC GTTTGACCGG TTTGACAGAG GAAGATGTTA TTGGTAAACC GGCTACTGTG
GATATAGCTG AAGGGGAGAG TATGCACTAC CGTGTTTTAA AGACCAAAAA ACCGGTAAAA
GGGGTAAAGA TGAAAGTTGG TCCATCAAAG AAAGAAGTCA TTGTCGATGT GGCCCCCATC
ATAGTTGATG GGAAATTAAA GGGAAGTGTT GGAGTTATCC ATGATGTTTC TAAAATTAAA
CGTTTAACTG AAGAACTGGA TCATGTCAGG AGAATTATCA GGCATTTAAA TGCTAAATAC
ACCTTTGAAG ATATCATTGG AGAAAGTGAA ACCATGAAGG CTGCCAAAAA CCAGGCCAGG
AAAGCCTCAA AAACACCGGT TACTGTCTTA TTAAGGGGGG AAAGTGGTAC TGGAAAGGAA
CTTTTTGCTC ATGCTATTCA TAATGCCAGT CCCCGCCAGA ATAATAAATT TATCCGGGTT
AACTGTTCAG CGATTGCTGA TAATATCCTG GAAAGTGAAT TATTTGGTTA TGAAGAGGGG
GCCTTTACCG GTGCCAGAAA GGGTGGTAAA AAGGGGTATT TTGAGGAAGC AGACGGAGGC
ACTGTTTTCC TGGATGAGAT TGGAAAAATC AGTCTGGACC TCCAGGCTAA ACTATTACGG
GTCTTACAGG AACGGGAAAT TGTAAGGGTT GGTGGGACCA GGCCCAGAAA TGTTGATGTT
CGTGTTATAG TAGCGACAAA TACCAATCTG GAGCGGGCCA TTCAGGAAGG AAACTTCAGA
GAAGATTTAT ATTATCGTCT TAATGTTTTC CCTCTTCATA TTCCACCCCT AAGGGAAAGA
AAAGAGGATA TACCGTTGCT GGTTCACCAT ATGATTAGAA AATTTAATCA GGAATATGGT
CGTTCGGTTA AGGGTTGTAG TGAAGATGCC CTTCAGAAAT TAAGGGAATA CCACTGGCCC
GGTAATGTGA GAGAGCTGGA AAATTTAATA GGTCGGGCCA TGATAAATAT GGGAATAGAA
GAAGAGGTTA TCAGGTTAAA GCATCTCCCA TTTTTTGACG GACCGGGGAA TAAAAAAACC
CGTGAAAATA AAGATGAATT GAATGTTGAA GATCGTTCAT TGAAAGAAAT AGTGGAATCA
ACCGAGAAAA AAGCTATTAT AGAAGCCTTG AATAAAACTG ATGGGAACAG GACAGAGGCT
GCTAAATTAC TCGGGATAGC AATTAGAAGC CTTTATTATA AGCTTGATAA ATACGGGATT
GACTGA
 
Protein sequence
MSEKVNFKQL SELNRKTDVI LNSTHDGLIS IGKDYKVELF NRAAEKILGI KKDRVLGKDV 
REVIPNTRLH IVLNKGEAEL NKIQHAGDIT IITNRVPVYD EQGNIIGAVA VFRDITEVKK
LAEEITNLKE MRTLLEAIIN ATQDAISVVD EKGIGILINP AYTRLTGLTE EDVIGKPATV
DIAEGESMHY RVLKTKKPVK GVKMKVGPSK KEVIVDVAPI IVDGKLKGSV GVIHDVSKIK
RLTEELDHVR RIIRHLNAKY TFEDIIGESE TMKAAKNQAR KASKTPVTVL LRGESGTGKE
LFAHAIHNAS PRQNNKFIRV NCSAIADNIL ESELFGYEEG AFTGARKGGK KGYFEEADGG
TVFLDEIGKI SLDLQAKLLR VLQEREIVRV GGTRPRNVDV RVIVATNTNL ERAIQEGNFR
EDLYYRLNVF PLHIPPLRER KEDIPLLVHH MIRKFNQEYG RSVKGCSEDA LQKLREYHWP
GNVRELENLI GRAMINMGIE EEVIRLKHLP FFDGPGNKKT RENKDELNVE DRSLKEIVES
TEKKAIIEAL NKTDGNRTEA AKLLGIAIRS LYYKLDKYGI D