| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_04460 |
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| Symbol | |
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| ID | 7314425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | + |
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| Start bp | 479792 |
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| End bp | 482824 |
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| Gene Length | 3033 bp |
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| Protein Length | 1010 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643610869 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_002508199 |
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| Protein GI | 220931291 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCAAAA ACTGGGACGA ATACCATCGG GTTGAAAAAA GGGCACTCAA CTTATTTGAA
AGGTTAGGTT ACAAGGTTTT CGATATTAAC AAGACCATGG AACGCCCTGC AAGGAATTCA
GAACACGAAG TTTTGTTACT GGATAATTTA AAAAAGGGAA TCAAGAGAAT TAACCCCTGG
ATTTCCGAAA ACAACCTGAA TAAAGCTGTC AATATGATTC GTCCTGCACG GATTAAGGCT
ACCAATTTGC TGGAAGCCAA TGAAATTATA TATGAAAGGT TAGTTAAACA TGTTTCTGTA
CTGCAGGACC TGGGCCAGGG CAAGAAAAAT CAGACGGTTA AATATATAGA TTTTGAAGAT
CCGGATAATA ACGAGTTTCT GGTGATGAAC CAGTATAAGG TAAAAGGAAG AGAAAATATT
ATTCCTGATA TAGTTGTCTT TATCAACGGT ATTCCGATTG GGGTTATAGA GTGCAAGGTT
GATACAATTG ACGAACCAGA AGAAAAAGCC ATCGAACAGT TGAGAAGATA TCAGAATATC
AGGGAATATG ACCTTGAAGA AGGTGCCGAA CAGTTATTTT ATACCAACCA GGTACTGGTG
GCAGCCTGGA AGGATTCTGC TTCAGCCAGT ACCATCGGTG CCCCTGCCAG GCAGTTTAAA
GCCTGGAAGG ACCCCTATCC CAGTACCATA GATAATATAA CAAAACTTGT AGGAGAAGAA
CCTACAATGC AGGATATTCT GTTATACTCC ATGTTTAAGA AGGAACGCCT CTTGGACTTA
ATACAGAACT TCATTGTTTT TGAGCGGGAA GGTAATGGAA TAGTTAAAAA ACTGGCCAGA
TATCAGCAAT ACAGAGCTGT CTGTAAAGCT GTTGAGAGGA TCAAAAATGC CAGAAAATTA
ACAGAGAGAA GCGGTACAGT CTGGCATACC CAGGGTTCGG GCAAGTCCTT AACCATGCTC
TTTTTAGCTC TGAAGTTAAG GCGAATGAAA GAACTGGAGA ATCCTACTCT ATTAATTGTG
ACTGACAGAA GGGATCTCGA TGAACAGATT ACAGGAACTT TTAAAAAATG TGGTTTTCCC
AATCCCATCA GGGCTAAAAG TGTAAAGGAT TTAAAAGAAA AACTCAGACT TGATGCAGGC
AAGACCATTA TGACTACAGT TCAGAAGTTT CAGGAAAGGG ATAATGACAA ATACCCGGTC
TTAAGTGAAG ATACCAATAT CTTTGTGATG GTGGATGAGG CTCATCGTAC CCAGTATAAG
GATCTGGCAG CCAATATGAG GAGGGCTTTG CCCAATGCCT GTTATCTTGG TTTTACAGGT
ACGCCAATAG ATAAAAAAGC AAGGAGTACC ATCAGGACCT TTGGTACATA TATTGACACC
TATACCATAG AAGAATCGGT AGAAGATGGG GCTACTTTAC CTATTTTCTA TGAAGCCAGG
CTGGCTGATT TAAGGGTTGA AGGCCGGGAT CTGGATAAGT TGTTTGATAG AATTTTTAAG
GATTATACTG ATGAAGAAAA GCAGAAGATT AAAGAAAAAC ATGCTACAGA AAAAGATATT
GCTGAGGCCA GTTCAAGGAT TGAAAAGATA TGCCTTGATA TTATTGAACA TTATGAATCC
AAAATCTACC CTTTTAAGGC CCAGATAGTA ACTGTTAGTA GAGAAGCTGC AGCTAAATAT
AAGGAGACAC TTGATAATTT GAATGGTCCT GAGTCTGCAG TTATCATTAG TGGAGATAGA
ACTGATAAAG GATTAATAAA AAAATATATA ACAACAGGTG ATGAAAGAAA AGAATTAATT
AAAAGATTCA AAGATTATCA TGATAGTCTG AAGTTTTTAA TTGTATGTGA TATGCTACTG
ACAGGCTTTG ATGCTCCTGT TGAACAGGTG ATGTATCTTG ATAAACCCTT AAAAGAATAT
AATTTACTCC AGGCTATAGC CAGGGTAAAT AGGCGATATG ATAACAAAAA CTTTGGTCTG
GTAGTCGATT ATTATGGAGT TTTTGATCAT TTGAAAGAAG CACTGGAAAT CTTTAATAAA
AAGGATATCG AAAATGCTGT TACGCCAGTT AAAGATGAAA AGCCCAGGCT GGAAAGAAAT
TACAGGGGAG TAATGAGGCT TTTTGATGGA GTTAATATGG ATAATCTGGA TCAATGCATC
CTTGCCTTTA AAGAGGAAGA TCAAAGAATT AAGTTTAAAA ATGCCTTTAA AGCCTTTGCC
CGCAGTATGG ACATTATCAT GCCTGACCCC ATTGCTGACC CATATCGTGA GGATTTGAAA
AAGCTGGGTA AAATTTATAA GGCAGTACGC AATCATTACC GGGATAAAAA CCTGAATATT
AAAGGAGTAG GGGATAAAGT TAAAAAATTA ATTGATAAGC ATATCATGGC CACTGACATT
AAAATCTTAA GTGAACCTGT ATCCATTCTT GACGAAGAAA AATTTGAAGA AACCATTAAT
GAAATAAGAA ATAAAGAAAC CAGGGCCAGT GAAATGGAAC ATGCCATTAG AAATGAAATT
AGTATAAAAA TTGATGAAAA TCCTGCCTAT TATCAATCAT TAAAAGAAAG GCTTGAGGAG
TTAATTGAAA GAAGAAAGCA GGGTATGCTT GATTTTGCAG AACAAATAGA AGAGATGAAA
GAAATTATAA ATGATATAAG AAATGTTAGG TCAAAGGCTG AGAGGTTGGG GCTAAATGAG
AAGGAGTTTG CCCTTTATGA ACTTCTGGTT GATGAGTTAG AACCATATTA TACAGAGGAA
GTGGCTGACC CGCCGGTAAA ATATAATGCA GGCAAACAAT CACGCACTGA TATAAAAATC
AATGAAAAGG TAAAAAATCT AGCTCAATCA TTAATCAACG AACTGGAGGA TATGGCTGTA
TTTGAATGGT ATAAAAAGGA GATTGTATTA AAGAACATGC GTAGAAAAAT CAAACTTTCT
CTGGCAGGTT ATAAGGAATT TAGGAATAAA CTTGACAGTC TTACTACAAA AATTATAAAG
CTTGCTCGAA ATATTTTGAT GATGATGCTT TAG
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| Protein sequence | MTKNWDEYHR VEKRALNLFE RLGYKVFDIN KTMERPARNS EHEVLLLDNL KKGIKRINPW
ISENNLNKAV NMIRPARIKA TNLLEANEII YERLVKHVSV LQDLGQGKKN QTVKYIDFED
PDNNEFLVMN QYKVKGRENI IPDIVVFING IPIGVIECKV DTIDEPEEKA IEQLRRYQNI
REYDLEEGAE QLFYTNQVLV AAWKDSASAS TIGAPARQFK AWKDPYPSTI DNITKLVGEE
PTMQDILLYS MFKKERLLDL IQNFIVFERE GNGIVKKLAR YQQYRAVCKA VERIKNARKL
TERSGTVWHT QGSGKSLTML FLALKLRRMK ELENPTLLIV TDRRDLDEQI TGTFKKCGFP
NPIRAKSVKD LKEKLRLDAG KTIMTTVQKF QERDNDKYPV LSEDTNIFVM VDEAHRTQYK
DLAANMRRAL PNACYLGFTG TPIDKKARST IRTFGTYIDT YTIEESVEDG ATLPIFYEAR
LADLRVEGRD LDKLFDRIFK DYTDEEKQKI KEKHATEKDI AEASSRIEKI CLDIIEHYES
KIYPFKAQIV TVSREAAAKY KETLDNLNGP ESAVIISGDR TDKGLIKKYI TTGDERKELI
KRFKDYHDSL KFLIVCDMLL TGFDAPVEQV MYLDKPLKEY NLLQAIARVN RRYDNKNFGL
VVDYYGVFDH LKEALEIFNK KDIENAVTPV KDEKPRLERN YRGVMRLFDG VNMDNLDQCI
LAFKEEDQRI KFKNAFKAFA RSMDIIMPDP IADPYREDLK KLGKIYKAVR NHYRDKNLNI
KGVGDKVKKL IDKHIMATDI KILSEPVSIL DEEKFEETIN EIRNKETRAS EMEHAIRNEI
SIKIDENPAY YQSLKERLEE LIERRKQGML DFAEQIEEMK EIINDIRNVR SKAERLGLNE
KEFALYELLV DELEPYYTEE VADPPVKYNA GKQSRTDIKI NEKVKNLAQS LINELEDMAV
FEWYKKEIVL KNMRRKIKLS LAGYKEFRNK LDSLTTKIIK LARNILMMML
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