Gene Hore_02950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_02950 
Symbol 
ID7314681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp302577 
End bp305210 
Gene Length2634 bp 
Protein Length877 aa 
Translation table11 
GC content39% 
IMG OID643610718 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002508051 
Protein GI220931143 
COG category[K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4624] Iron only hydrogenase large subunit, C-terminal domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAGGCT TGATAGAAAC TATTAAGGAT AGGTGTCACG AGTGTTATGC CTGTGTCAGG 
AATTGCCCAG TTAAGGCTGT CAGGGTAAAA AACAGACAGG CCGAGGTTAT CAGTGACCGG
TGTATTCATT GTGGTAATTG TGTCCTGGTA TGTTCCCAGG GAGCCAAGAA GGTCCGAGAT
TTTAAGGAAA TTGCTAAACA GTTCTTACAG GATAATGATA AAATAGTAGC CGGTCTGGCT
CCCAGTTTTC CTTCATATGG CAATCAACTT TCCCTTGATG ACTGGGTAAG TTATTTGAAG
TCACTGGGTT TTAACAGGGT TTATGAGGTG GCCTGGGGTG CAGAAATGGT TATTAAGGAA
TATAAAAAAA TATTAAAAAA GGCAACAGGT CCTGTGATTA GTTCGGCATG TCCGGTAATT
GTTAATCTAA TAAAAAAATA TTACCCCGAT CTCCTGACCT ACCTGGCAAC GATTGTTTCT
CCCATGAAAG CCCTGTACCG GTATATTAAA AAAATAGAAG GAAATGATGT GAAAGTAGTT
TTGATAGGTC CCTGTCTTGC TAAAAAAGGT GAGTTTGAAG GATATGAAGA TGTAGTAGTT
CTGACATTTA GTGAAATAGC TGAACCCGGT CAAAACAGTG GTGATTATCA AAAGATAATT
ACAGCTTCAA AGCAAGAGGT AACAGATCGC AGAAATACTG ATACCATCAA AAGAGAACCA
GATGATGAGA GCCGGGCTCT TCCCCTGGCC GGAGGATTAA TCCGGGCTAT TACTGGAAAA
TGTAATATAT TTCCAGAGGG TTATAATCAG GTTGAAGGTC GGGAGAAGGT AATTGATCTA
TTAAATAGTA TCAGGAATGG TGAAATAAAA CCTCGATTTG TTGATGCATT ATTTTGTGAG
GGTTGTATTA ACGGGGTTGA TTTGTATCAT GAAAATTACT TCAAAAAGGA AAAGGCGGTC
TTTAACTTTA TCAACCGGGC TAAAGATAAT AATGTTGCTC AGGCGAAGTA TTCTGAAACA
GTAGCTTCCA GAATCTCTTT AAAAGTTAAG TTTAAAGAAG ATTATAGGGA ACTTGCCAGC
CCGGGAGAAG AAGAAATCTG GAGTATATTA AATCAAACAA ATAAGTTTAC TGAAGAGGAT
TTACTGGACT GTGGAGCCTG TGGTTATGCA ACGTGCTGGG ATAAGGCTAT TGCCGTTTAT
CAGGGGCTGG CTGAAGTTGA AATGTGTTTA CCATACCTTA TTAATGAGAA GCGGTCTGAG
CTTAAAGAGA TTCAAATATT GAATAAAGAG ATGGATACAT TGATTAATTT CTCCTGTGAT
GGCCTGGTTA TGGTCAGTAA AGATGGCCGG ATAGAACGTG TTAATCATTC GTATCTGAAC
ATGGTAGGTT TTAAAAGGCA GGATTTAATC GGAAAGAGAG TTGAAGAGCT AGAAAAGGAG
AGATATATTT ATCCATCTGT TGCCAGTCTG GCCCTTAAGG AAAAACGGAA TATTACCCTG
GTTGAAAATA CCTCTGATAA AAAAAGACTT TTGGCAACAG CTAATCCGGT TTTTAATGAA
AATGGTGACC TGGAGTGGGT GGTGGTTAAT GTCAGAAATT TAGATTTAAT AAATGATGAA
AAGGATAAAG AAAAGGAAAA GTTAAAAAAA TATCTTGATA ATGCCCCTCA GCTGGATAAT
AACCCCGAGG GTAATACGGG CCATATAATT GTTAGTTCAG ATGAAATGAA AAATATATTA
ATGACCTGTC GTAAGATAGC TGGAACAGAT TCGACTGTTT TAATAACTGG AGAATCAGGG
GTTGGAAAAG AAGTTGTTGC CAGGTATATT CATGAACAGA GCCCGGGGAG GCAAGAATTT
GTAAAAATTA ACTGTGCTGC AATTCCCGAA AGCCTGCTCG AATCCGAACT GTTCGGGTAT
GAAACCGGTG CTTTCAGTGG AGCCAAAAGA GCGGGCAAAC CTGGTTTGAT TGAAAAAGCT
GACAGGGGAA CTCTCTTTCT GGATGAAATC GGTGAAATGC CCCTTAATAT GCAGGCAAAA
TTACTTCAGG TTCTTCAGGA ACGGAAACTT ACCAGGATAG GTGGGGTAAA ACCCGTGAAG
ATAGACTTTA GATTGATTGC AGCTACTAAT AGGGATTTAC GGCAAATGGT CAGGCAAAAA
TATTTCAGGC AAGATTTATT TTACCGCCTT AATGTTGTAC CTCTATATAT ACCCCCATTA
CGGAAAAGGC CTGAAGATAT TTTATCTCTT ATTAAATATT TTCTTGATCA ATATTGTGAA
AAATATAATA AACAGATTAA GCTAACCAGG GATGCGGAAG AACTACTGCT CAGTTATAGT
TGGCCCGGAA ATGTTCGTGA ATTAACTAAT CTGATAGAGA GGTTGGTGGT AACTTGCGAA
GAATCTTTTG TTGACCGTAA TATTATTATT GAATATATCG ATAATCCTGA GGTCAAGACA
CCGGAGATTT TAATAAATAA AATAATGCCC TTACCTGAGG CTGTTGCCAG AGTCGAAAAG
AAATTACTTT CCATGGCCAG GAGTAAAGGT AACTCCACTT ATGATATGGC TAAATTACTG
GGGGTTAATC AATCCACAGT TGTCAGGAAA TTACATAAAT ATTTTAAACA GTAA
 
Protein sequence
MVGLIETIKD RCHECYACVR NCPVKAVRVK NRQAEVISDR CIHCGNCVLV CSQGAKKVRD 
FKEIAKQFLQ DNDKIVAGLA PSFPSYGNQL SLDDWVSYLK SLGFNRVYEV AWGAEMVIKE
YKKILKKATG PVISSACPVI VNLIKKYYPD LLTYLATIVS PMKALYRYIK KIEGNDVKVV
LIGPCLAKKG EFEGYEDVVV LTFSEIAEPG QNSGDYQKII TASKQEVTDR RNTDTIKREP
DDESRALPLA GGLIRAITGK CNIFPEGYNQ VEGREKVIDL LNSIRNGEIK PRFVDALFCE
GCINGVDLYH ENYFKKEKAV FNFINRAKDN NVAQAKYSET VASRISLKVK FKEDYRELAS
PGEEEIWSIL NQTNKFTEED LLDCGACGYA TCWDKAIAVY QGLAEVEMCL PYLINEKRSE
LKEIQILNKE MDTLINFSCD GLVMVSKDGR IERVNHSYLN MVGFKRQDLI GKRVEELEKE
RYIYPSVASL ALKEKRNITL VENTSDKKRL LATANPVFNE NGDLEWVVVN VRNLDLINDE
KDKEKEKLKK YLDNAPQLDN NPEGNTGHII VSSDEMKNIL MTCRKIAGTD STVLITGESG
VGKEVVARYI HEQSPGRQEF VKINCAAIPE SLLESELFGY ETGAFSGAKR AGKPGLIEKA
DRGTLFLDEI GEMPLNMQAK LLQVLQERKL TRIGGVKPVK IDFRLIAATN RDLRQMVRQK
YFRQDLFYRL NVVPLYIPPL RKRPEDILSL IKYFLDQYCE KYNKQIKLTR DAEELLLSYS
WPGNVRELTN LIERLVVTCE ESFVDRNIII EYIDNPEVKT PEILINKIMP LPEAVARVEK
KLLSMARSKG NSTYDMAKLL GVNQSTVVRK LHKYFKQ