Gene Hore_01170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_01170 
SymbolrplC 
ID7313244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp136663 
End bp137298 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content41% 
IMG OID643610539 
Product50S ribosomal protein L3 
Protein accessionYP_002507873 
Protein GI220930965 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value7.94381e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCCAAAG GAATAATTGG AAAAAAGCTG GGGATGACCC AGATATTTGA TGATGATGGT 
AATGTTATTC CAGTAACTGT AGTTCAGGCT GGCCCCTGTG TTGTTATCCA GAAAAAAGTT
GAAGAAAGAG ATGGATACAA TGCTCTGCAG GTGGGTTTTG AAGATGTGCC TGAACACAGA
GTAAATAAAC CTTTGAAAGG CCATTTTGAA AGAGCAGGGG TTAAACCCAA AAAACATGTT
AAAGAATTCA TGGACTTTCC TGAAGACCTG AATGAAGGTG ATGAAATCAC TGTTGATATA
TTTGAAGAAG GTGAACTGGT AGATGTAACC GGTATTTCCA AAGGTAAAGG TTTTGCCGGT
ACAATTAAAA GGTGGAATTT TAGCAGAGGG CCAATGAGCC ATGGTTCTAG ATTCCACAGG
GCTCCAGGTT CAATTGGTGC TGTTGATGCT TCTCGAGTTT TTAAAGGCCA GAAACTTCCC
GGAAGGATGG GTCATGACCG GGTTACCATT CAAAACCTGG AGGTAGTAAG GGTAGATTCT
GAGAAAAATC TACTTTTAAT TAAGGGTTCT GTACCCGGAC CCAACAAAGG TATTTTAACT
ATCAGGGAAG CAGTTAAAAA AGCCAGTAAT GCCTAG
 
Protein sequence
MAKGIIGKKL GMTQIFDDDG NVIPVTVVQA GPCVVIQKKV EERDGYNALQ VGFEDVPEHR 
VNKPLKGHFE RAGVKPKKHV KEFMDFPEDL NEGDEITVDI FEEGELVDVT GISKGKGFAG
TIKRWNFSRG PMSHGSRFHR APGSIGAVDA SRVFKGQKLP GRMGHDRVTI QNLEVVRVDS
EKNLLLIKGS VPGPNKGILT IREAVKKASN A