Gene Hore_01170 details

Gene Information

• Locus tag: Hore_01170
• Symbol: rplC
• ID: 7313244
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothermothrix orenii H 168
• Kingdom: Bacteria
• Replicon accession: NC_011899
• Strand: +
• Start bp: 136663
• End bp: 137298
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643610539
• Product: 50S ribosomal protein L3
• Protein accession: YP_002507873
• Protein GI: 220930965
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.0000794381
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCAAAG GAATAATTGG AAAAAAGCTG GGGATGACCC AGATATTTGA TGATGATGGT 
AATGTTATTC CAGTAACTGT AGTTCAGGCT GGCCCCTGTG TTGTTATCCA GAAAAAAGTT 
GAAGAAAGAG ATGGATACAA TGCTCTGCAG GTGGGTTTTG AAGATGTGCC TGAACACAGA 
GTAAATAAAC CTTTGAAAGG CCATTTTGAA AGAGCAGGGG TTAAACCCAA AAAACATGTT 
AAAGAATTCA TGGACTTTCC TGAAGACCTG AATGAAGGTG ATGAAATCAC TGTTGATATA 
TTTGAAGAAG GTGAACTGGT AGATGTAACC GGTATTTCCA AAGGTAAAGG TTTTGCCGGT 
ACAATTAAAA GGTGGAATTT TAGCAGAGGG CCAATGAGCC ATGGTTCTAG ATTCCACAGG 
GCTCCAGGTT CAATTGGTGC TGTTGATGCT TCTCGAGTTT TTAAAGGCCA GAAACTTCCC 
GGAAGGATGG GTCATGACCG GGTTACCATT CAAAACCTGG AGGTAGTAAG GGTAGATTCT 
GAGAAAAATC TACTTTTAAT TAAGGGTTCT GTACCCGGAC CCAACAAAGG TATTTTAACT 
ATCAGGGAAG CAGTTAAAAA AGCCAGTAAT GCCTAG 

 

Protein sequence

MAKGIIGKKL GMTQIFDDDG NVIPVTVVQA GPCVVIQKKV EERDGYNALQ VGFEDVPEHR 
VNKPLKGHFE RAGVKPKKHV KEFMDFPEDL NEGDEITVDI FEEGELVDVT GISKGKGFAG 
TIKRWNFSRG PMSHGSRFHR APGSIGAVDA SRVFKGQKLP GRMGHDRVTI QNLEVVRVDS 
EKNLLLIKGS VPGPNKGILT IREAVKKASN A