| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_00900 |
|---|
| Symbol | |
|---|
| ID | 7314312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | + |
|---|
| Start bp | 109298 |
|---|
| End bp | 109828 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643610512 |
|---|
| Product | transcriptional regulator, CarD family |
|---|
| Protein accession | YP_002507846 |
|---|
| Protein GI | 220930938 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1329] Transcriptional regulators, similar to M. xanthus CarD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 8.92061e-17 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAATG AAGAGGGGTT GATTAACAAG ATGTTTAAAG TTGGTGACAA AGTAGTATAT
CCCAATCATG GGGCTGGTAC GATAGTCGGT ATAGAGACCA AAAATATTCT GGGAGAAGAG
AAAAAATATT ATATCATGAA ATTGCCGATC GGGGATATGA AGGTTATGAT TCCGGTTGAA
AAAGTTGAAG AGATTGGAGT CAGGAACATT ATCGACGAGG AAGAGGCCGA TAATGTTTTA
AAGTTATTAA AAGGCGATAA AAGTAAGATG TCACAGAACT GGAACCGGCG TTACCGGGCC
AATATGGAAA AATTGAAGAC CGGTGATATA TATGAGGTTG GGGAAGTTGT CAGGAATCTG
ACCATCCGCG ACCATGAAAA AGGTTTATCT ACCGGTGAGA AAAAAATGTT AAGTAATGCC
CGCCAGATTT TAATAAGTGA ACTGGTTTTG GCCAAGGATA TGGATGAAAA AGAAGTTGAA
GAAATAATCG ACAATGTTTT TGAAGAAAAT CCCAATCTTG ATGAAGAGTA A
|
|---|
| Protein sequence | MANEEGLINK MFKVGDKVVY PNHGAGTIVG IETKNILGEE KKYYIMKLPI GDMKVMIPVE
KVEEIGVRNI IDEEEADNVL KLLKGDKSKM SQNWNRRYRA NMEKLKTGDI YEVGEVVRNL
TIRDHEKGLS TGEKKMLSNA RQILISELVL AKDMDEKEVE EIIDNVFEEN PNLDEE
|
|---|
| |