Gene Hore_00550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_00550 
Symbol 
ID7314273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp61533 
End bp63905 
Gene Length2373 bp 
Protein Length790 aa 
Translation table11 
GC content37% 
IMG OID643610473 
ProductSerine/threonine specific protein phosphatase spoIIE 
Protein accessionYP_002507811 
Protein GI220930903 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR02865] stage II sporulation protein E 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00773403 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTGGAC AAGTTGAATC AGTAAAAAAT TATAGTTTTT TGAAAGATAA TATTAAAACC 
AAAAGTAAAT TATCATATTT TTTTTATTAC CTGATAATCG GGGTTTTAGG TTTTATCCTC
GGCAGGGCAG AGGTGTTTAG TGGATATTAC CCTTTTTCCC TGATATACTG GATGGGTTTT
GCCCTGGAAA GCCCACTGGT AATGATTTAC ATCACTGTAG TAAGTGGAGC AGGGCTGGCC
TGGAATGGAG ATTATTTGAA TCTTATTTAT CTGCTGGCTG GATTTTCAGG GGTTATCCTC
AGTAGTTTTT TTAAAAAAGG GAAAGATTCT ATTTTCTTTC CGGTAGCTAC GGGATTATGC
TATCTTGCCC TGTCCATTGT CAGAGGGATA ATTTATCAAA AACCCCTTTA CTGGTTTGTA
ATAACAGGTA TTGAAGCCCT TGGTATTATA CTAGTTTTTT TATTATTAAA GGGTACCAGA
ATACATATTT TTGATAAGCA GGGGTTTGTA AAGGCTTCAC CAGTGGTGTT ATTGATAACC
AGTCTGGGAT TTCTGGTGGG GATTGCCAAT ATTGATTTTG TTCCCTTTTT TGTCTTACAT
ACATTTATCT ATTTGTTTGT CAGTGGTGTT GCCTATATTT CCGGGTTTAG TTATGCAGTT
ACTGTTTCGG TGTTGTATGG TTTAATATTG AGTGGGCTGG GTCTGATACC ATTTGTAGTT
ATGTTGAGAA TTTTAATTAT CGGCGTTATA ACAGGGCTTT TTAAAAGAAA ACCTAAATAT
ATGTTTATAG TAGGTTATTT TTTAACCTTT TTAGTATATT CTGGTTTTTC ACCAGGATTA
TATGATTTAA AAGAGGCTGG TTATGGGTTT GGGATTGCGC TGGCCCTTTA TCTGGTGATA
TCTGAATCCC TGTGGGTACA ACTACTGTCG GGTTTAAAAC CCAGTCCTTC CCGGGTTAAA
AAGTTGAAAA CAGATAATGA GTTAAATAAA ATTTTTAAAC AACACCTGCT GGAATTGAGC
CGGGTTTTTA AAGAATTAAG TGTTACGTTT AAAGAGGTTT TACCTGATGA GGAAGAAGAA
GAGAACCTGG AAGACCTGGC GTTTATTTTA AAAAATAAAG TCTGTCAGAG ATGCCCCCGA
CTTAAAATAT GCTGGAAAAA GGAACGGGCA GACACCTATA TGAAACTCAG CAGGTTAGTT
GAAAAGGCCA GGAAAGCCGG TAAAATAGAA AAACCAATGT TTAATAACCT ATTTAAAGAT
AAATGTCCTT TTATCAACAA AATTATCGGT GGGGTTAAAA GTAGTTATGA AATATACCAG
GTAAATAAAT TCTGGCGGGA AAGACTGGAT GATAAACAGC GTATTGTTTC TGAACAACTG
GCGGGACTGA GCGAAATAAT TCAGCAATTT TCCCAGTCTT CAGGTATTGT ACTAAGGGAT
AACCCGACAC TTTCCCACAT ATATGAAAGG GCTGTTAACC GGGGAATTGA TGTTTATAAT
CTGGAGGTTG ATACTAATAT TTATTCATCC CGTCTTAATA TTGTAGCAGA AATGGAACCC
TGTAGTGATA CCAGACCCTG TGAAGAACAG CTTTTACCCC TTATTAGCTC TGAATACCAA
TATAATTTCA GGGTAATAAA TAAAAAGTGT GGTAATAAAC TTAAAGATAT TCCCTGTAAA
TTATTATACG CCCCCCGGGG TAGCTATAGC CTTGAATATG CTGTTTTACA GAAGGCAAGT
ACCGGGAAAA TATCAGGGGA TACATATCTT TTTAGACCTT TGAGGGATGG TAAGGATTTA
ATTGTCTTAA GTGATGGGAT GGGAGTTGGG AAAAAGGCCT ATCAGGAAAG TAAAGCTGCT
GTGAATCTCC TTGAAAAGAT TATTGAAGCC GGTTTTGACC GGGATCTGGC GATACGGACA
ATTAACTCAG CCCTGTATTT CAGAAGCCAG GAAGAAAGTT TTACAACTCT GGATATCGGC
TTTTTTGATA CTTTTACCGG GGAACTTATC TTCAATAAAA TCGGGGCAGT ATCAAGCTTT
GTGAAACGGG GTTTTGAGGT TTTGCAGATA AAGGCTTCTT CCTTACCGGT TGGAATTTTA
GAGAAGGTTG AAATTTCTAC TCATTCTGTA AACCTAAAGG AAAATGATTT TGTTATTATG
GTGACCGATG GGGTCCTGGA TTCGAGTCCT GACATTCAGG ACAAAGAAGG TTGGTTTATG
AGAATACTTC AGAATTGTTC TTTTGATAAC CCCAGAGAAC TGGCATCATA TCTTATGGAG
GTTGTTACCG GGGCCCAGGG CGGAGTTGAT GATGATTTAA CTATTATTGT ATTTAAGGTC
AACAAATTTT TAGAAAAAAA GCAGGAAATT TAA
 
Protein sequence
MFGQVESVKN YSFLKDNIKT KSKLSYFFYY LIIGVLGFIL GRAEVFSGYY PFSLIYWMGF 
ALESPLVMIY ITVVSGAGLA WNGDYLNLIY LLAGFSGVIL SSFFKKGKDS IFFPVATGLC
YLALSIVRGI IYQKPLYWFV ITGIEALGII LVFLLLKGTR IHIFDKQGFV KASPVVLLIT
SLGFLVGIAN IDFVPFFVLH TFIYLFVSGV AYISGFSYAV TVSVLYGLIL SGLGLIPFVV
MLRILIIGVI TGLFKRKPKY MFIVGYFLTF LVYSGFSPGL YDLKEAGYGF GIALALYLVI
SESLWVQLLS GLKPSPSRVK KLKTDNELNK IFKQHLLELS RVFKELSVTF KEVLPDEEEE
ENLEDLAFIL KNKVCQRCPR LKICWKKERA DTYMKLSRLV EKARKAGKIE KPMFNNLFKD
KCPFINKIIG GVKSSYEIYQ VNKFWRERLD DKQRIVSEQL AGLSEIIQQF SQSSGIVLRD
NPTLSHIYER AVNRGIDVYN LEVDTNIYSS RLNIVAEMEP CSDTRPCEEQ LLPLISSEYQ
YNFRVINKKC GNKLKDIPCK LLYAPRGSYS LEYAVLQKAS TGKISGDTYL FRPLRDGKDL
IVLSDGMGVG KKAYQESKAA VNLLEKIIEA GFDRDLAIRT INSALYFRSQ EESFTTLDIG
FFDTFTGELI FNKIGAVSSF VKRGFEVLQI KASSLPVGIL EKVEISTHSV NLKENDFVIM
VTDGVLDSSP DIQDKEGWFM RILQNCSFDN PRELASYLME VVTGAQGGVD DDLTIIVFKV
NKFLEKKQEI