Gene Hore_00480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHore_00480 
Symbol 
ID7314265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothermothrix orenii H 168 
KingdomBacteria 
Replicon accessionNC_011899 
Strand
Start bp53950 
End bp55980 
Gene Length2031 bp 
Protein Length676 aa 
Translation table11 
GC content40% 
IMG OID643610465 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_002507804 
Protein GI220930896 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTTTAA AAAAATTAAA TATTTTTTCG CCCATTTATA GAATATTGAA AAAAATAATA 
AGTAGTTATT CCCTTTACAC CAAATTATTG CTGTTCTTTT TAATTGTAAT GATTATACCT
CTTGGTTTGA CCTTTTATAA TGATTATCGC TTGACCAATG ATTCCCTGGA AAAGAGGCTG
GATGAAAAAA TACTGACCGG GAAAAATTTT GTAGAAAGGA TATATGAATC TGATATCAAT
AGGGTTGAAG GGCTGGCGGT TATAAAAGCC AGTGATACCT CAATCCAGGA AACCGTTGCT
ACCAAAAATT TGTTGCAGTT GATGAATATT CTCAGGCCGG CATTTATTAA TAAAAACAAT
ATTGATCTAG CCGCTATTTT AGATAGCAAG GGTAAAGTTA TAACCCGCCG GGGAAACCTC
CCTAATAAGG ATTATAAACT GGAGTCCAGG TACATAGAGG GGATAAATGA TAAAAGGATC
TCTGTTAACC AGATTGAGAT GACCACAGAG GGGATAGTTA TCAAGGGAGC CCAGGCTATT
ACTGACCCCG ATCAGGCTAA CCTGGTTCAC GGTATCTTTT TAACCGGGCT TGTTATGGAT
AAAAGTTACT GGATAGATTT AAGTCAGGAC CTGGGAATGG AAATAATATT ATTTGATAAA
GATGGTCAGC CTGTTACAGC TTCTTTCAGT AATGAAAAGC TTTCTAAAAT AAGTTTAAAA
ACTAATACAG AGGATAGCAA CAACATATGG GTAGATCATT TAATTTCAGA TACAGAGTAC
AGAATGGTTG CTTTTCCGGT TACTGACCAT AATAGTAAAA TTATTGCCTA TCTAGGGGTA
ACAACACCCA AAACCCCTAT ACTAAATGCA GGCAATAAAA TGAAACAGTC GATGATTATT
TATGCTCTTA TCGGTGCCTC TATTGCCATA CTAGTGGGGA TATTTCTGGC CAGGAGTATC
AGTAAGAGGG TTAAAGGCTT AATCAGTGTA GTCGAACGGG TCGCTGAAGG TGATCTGAGT
CAGAAGATAA AGATCAAAGG CCGTGATGAA ATAGCTTACC TCGGTAAGAG TCTGAACCAG
ATGGTTAATA ATTTAAAGGG CCTGGTAATA GAAGTTATGT CCAGTTCTAA TCAGGTTGCG
TCTGCGGCTC AGGAGCTGGC CGGTTCCAGC CAGGAAGCCA CCGCTATAAC GGAACAGGTT
ACAGCTACCA GTGAAAATAT TTCAGATGGA ACTGCTGAAC AGGTAGAAAA AATTAATGAA
GCATCATTAA TTATTAAAGA AATGTCCCGG TCTATTCAAG AAGTGGCTAA AGGGGCCCAG
GAGGTTGCGG GTAAATCAAA GACTGCCCGG AACCAGGTAG AACTGGGTCA GGAAGCTTTA
GAAGACTTGC TCCATCAGAT TGATAAAATT GGAGAAATAG TAGAACAATC AGCCAGGGTT
ATAAAACAAC TCGATACCCG GTCCAAGGAA ATTAATAAAA TTATCGGATT AATCAGTGAA
ATTACCGAAC AGACAGACTT ACTGGCCTTA AATGCCGCTA TAGAGGCGGC CCGGGCCGGA
GAACATGGCC GGGGTTTTGC CGTAGTAGCT GATGAGGTAA GAACCCTTGC CAACCAGTCA
AATGAGGCTG CTACCAATAT TAGCAAGATT ATAGAGGAAA TTCAGAATGA TACCCAGAAA
GCAGTAGATG TTATGGATGA GGGAACCACG GTGGTAGAAG AGGGTAATTT TGCTGCTGGT
AAGGCTAAAG ACACATTTGC CGGGATCAGA CAGGCTGTTG AAGATACCTC AAAAATTGCT
GAAAGTATTG CTGAGGCTAC CAGGGAACAG AAACATGGTA GTGATGAAAT GGTAACTGCC
ATAGAGGAAA TTAATAATAT ATCCCAGAAT ACAGCCCAGG GTGCTGGTCA GATTAACCAG
GCTATAAGTG AACAGTCTCA GACCATCGAA GGTATTTCCA ATTCTTCAGA AACCCTGGCT
ATCATGGCAG ATAAACTCAG AGGATTAATT GATAAATTTA AGACTGAATA G
 
Protein sequence
MFLKKLNIFS PIYRILKKII SSYSLYTKLL LFFLIVMIIP LGLTFYNDYR LTNDSLEKRL 
DEKILTGKNF VERIYESDIN RVEGLAVIKA SDTSIQETVA TKNLLQLMNI LRPAFINKNN
IDLAAILDSK GKVITRRGNL PNKDYKLESR YIEGINDKRI SVNQIEMTTE GIVIKGAQAI
TDPDQANLVH GIFLTGLVMD KSYWIDLSQD LGMEIILFDK DGQPVTASFS NEKLSKISLK
TNTEDSNNIW VDHLISDTEY RMVAFPVTDH NSKIIAYLGV TTPKTPILNA GNKMKQSMII
YALIGASIAI LVGIFLARSI SKRVKGLISV VERVAEGDLS QKIKIKGRDE IAYLGKSLNQ
MVNNLKGLVI EVMSSSNQVA SAAQELAGSS QEATAITEQV TATSENISDG TAEQVEKINE
ASLIIKEMSR SIQEVAKGAQ EVAGKSKTAR NQVELGQEAL EDLLHQIDKI GEIVEQSARV
IKQLDTRSKE INKIIGLISE ITEQTDLLAL NAAIEAARAG EHGRGFAVVA DEVRTLANQS
NEAATNISKI IEEIQNDTQK AVDVMDEGTT VVEEGNFAAG KAKDTFAGIR QAVEDTSKIA
ESIAEATREQ KHGSDEMVTA IEEINNISQN TAQGAGQINQ AISEQSQTIE GISNSSETLA
IMADKLRGLI DKFKTE