| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_3090 |
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| Symbol | |
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| ID | 7311688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium cellulolyticum H10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011898 |
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| Strand | - |
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| Start bp | 3624126 |
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| End bp | 3627650 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643609994 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002507362 |
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| Protein GI | 220930453 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.192538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTTT TTACAGATCC TCTCTTAAAA ATAGATGAAT ATAATACACT TTTATCAAAC
GTCAGGGAGG AACGGGGCCC CGTATCGGTT ATAGGGCCGT CAGATTCACA GAAGGTGCAC
CTGATATATT CTTTGTGTAC TCATTTACAA AAAAGAGGAC TGTATATAAC ATACAATGAA
ATGCAGGCCA GGAGGGTTTA CGACGATTTT TCGTTTTTCC TTGGGGATGA TGTTTTGTAT
TACCCTCCAA AAGAGACTAT GCTCTATAAT GTAGAAGCCA GAAGCAACGA TATAATATAC
CAAAGGACTA AAACCCTTTT GAACTGTTTA GAGGGAAACT ATAAGATGGT TGTAATGTCA
GCTGAAGCGC TTATACAGAT GATTTCACCA GTTGAACTCT TTAGAGAAGG GATAATGGAC
TTCTATGTCG GTTCACAGGT GAATCTTGAT GAGCTTGTCT CAAAGCTTGT TTTGTATGGC
TATGAAAGAG TTGAAAGTGT GGAAGGTAAA GCTCAGTTTG CTGTTCGAGG TGGAATAATA
GATGTTTTTG CAGTAAACAG TGAACATCCT GTTCGTATTG AATTATTTGA TACTGACGTG
GATTCTATTA GGCACTTTGA TGAAACAACA CAGAGATCTA CAAATTCAAT TGATGAGTGC
AGAATTGCTC CCGCAAGGGA CGTAGTTTAC AAGGAAGTTT CAAGGGAAGG AATAATTTCA
AAGATAAAAA AGGATCTGGC TGACTACATT AAAAAGTTAA AGCAGAAGGA GAACAGAGAA
GGTGTTAAAA ATATATCAAA ACGGGTTGAG GAGGATATTG ACAGTTTAAT TGAACACCAT
TATTTTCCGG GGATTGACAG ATACTATCCG TATATTTTAG AAAGTCCAGC TTCTGTAATA
GACTATATTG AGAGTGAATC AATCATTATC ATGGATGAAA CCTTAAGAAT AAGCCAGAGG
ATTGAGAACG TCGAGCTTGA ACATGAAGAA CTTGCCAAGA GTCTGTTAGA GAAAGGCGGT
ATTCTGCCTA AAGGAGCACA ATGGACCTTT TCCACAGACT CAATAGTCGA TCGCATTTTG
AATTTCAGGA CTATAACATT GTCTGCTATT TCATCCAACA ACTCACTAAT CAGACCTTAT
AACCAGATAT CAATACCCTG TAAGTCAGGG AACTCTTACC AGAACCATAT AGACTTACTT
GTTGACGACA TAGGACAACT TCGGAAAAGA GAATATAAAA TAATTGTTCT TTCAGGCCCC
AGCGGGAGGG GACACAGACT GGTTGAAACC CTTGCAACTA ATGAAATAAT GTCCAGTTAC
AAAGAGCATC CTGAGTACAG GATACAGAAC GGAGAGGTTG TGGTAACTCA CGGCAGCCTG
CAGAAAGGGT TTGAATACCC GACCGCGGCA TTTGTTGTAA TAAGTGACAT TGAGGTTTTC
GGTCAGGCTA AACGAATAAA AAAGGCAAAG GCAAAGAGGG CTGGCAATAA AATAAAAGCA
TTTTCCGACC TCAATATTGG TGACTTTGTT GTACATCAGG CTCACGGTAT AGGCCAATAT
ATCGGTATTG AAAATCTCAG CGTGGGTGAA GTTAAGAGGG ATTATCTCAA AATCCGTTAT
CAGGAAGGAG ACTTCCTTTA CATTCCAACT AACCAGCTGG ATTTACTCCA AAAATACATC
GGGTCCGAAG GGAAAACACC GAGGGTTAAT AAGCTTGGAG GTACTGAATG GGCCAAGACA
AAGAGTCGTG TAAAGGAATC TCTGCAGCAA CTTGCGGCGG AGCTCATAAA GCTTTATGCA
CAGAGACAGT CTGCAAAGGG ACATTCTTTC AGCGAGGACA CCGTTTGGCA AAGGCAGTTT
GAGGAACTGT TTCCATATCA GGAAACCGAC GATCAACTTA AATGTATAGA TGAAATAAAA
AAGGATATGG AGTCAGAAGG GCTCATGGAC AGGCTGCTTT GCGGAGATGT GGGCTACGGC
AAAACCGAAG TTGCAATAAG GGCTGTATTC AAGGCCGTGA TGGATGGGAA GCAGGTGGCT
TACCTTGCAC CTACAACTAT CCTTGCCCAG CAGCTGTATG AAAACTTTAA GACAAGGATG
AATGATTTCC CAGTAACTGT TGATGTCATG AGCAGATTCA GGACACCGGC AGAGCAGAAG
AAAATTGTAA AATCTGTTAA GGCCGGGAAC ACAGATATAC TCATAGGCAC ACACAGGCTT
CTGCAAAAGG ATGTTGAATT TAAGGACCTT GGACTTCTTG TGATTGATGA GGAACAGCGT
TTTGGTGTAA CCCACAAGGA AAAATTGAAA ACGTTAAAGC CAAATGTTGA TGTCTTGACT
CTGACAGCTA CACCTATCCC CAGAACCCTG CATATGTCAC TGGTCGGAAT AAGGGATATA
AGTGTACTGG AGGATCCTCC GGAAGAAAGG TACCCTGTTC AGACCTACGT TATGGAATAC
AACATGGAGC TTATACGTGA TGGTATAATC CGTGAAATGG CAAGAGATGG TCAGGTTTTC
TATATGTACA ACAGGGTAAG AGGCATTGAC CTGAAGGCAC AGGAAATCAG GAAAATGATA
CCTGATGCAA GAGTTGCGGT TGCTCATGGT AAAATGAATG AAAAAGAGCT TGAAGATGTA
ATGTACGGCT TTATCAACGG GGAGTATGAT GTGCTTGTAT GTACTACTAT TATTGAGTCA
GGACTTGATA TGCCAAACGT TAATACTATT GTTGTAGAAG ATGCCGACAG AATGGGCCTA
TCTCAACTTT ACCAGATAAG AGGAAGGGTT GGAAGATCCA ACAGGCTTGC ATATGCCTAT
ATCACATATA AAAAGGACAA GGTTCTTTCA GAGGTGGCAG AAAAAAGACT TCAGGCTATA
AAGGAATTTA CTGAATTCGG TTCAGGATTC AGAATAGCAA TGCGGGACCT TGAGATAAGA
GGGGCAGGAA ACCTGCTTGG ATCTGAGCAG CACGGACATT TGGAAACCGT AGGTTACGAA
ATGTACTGCA AACTACTGGA CGAGGCTGTG CAGGAGTTGA GCGGCAAGGA AGTACGCACA
ACAGATGAAG AAATGGCAGT TGACCTGAAC GTTAATGCTT ATATAGATAA TGAATATATA
AGTTCAGAAG AGCAAAAAAT TGATATGTAC AAAAAAATTG CCGCAATACA AAATGAAAAT
GACGTCATTG ATTTGAAAGA TGAGTTAATA GACAGGTACG GAGATATACC CGAAGAAGTG
GAAAATCTTA TGGACATTGC ATACATTAAG GCACTTGCTG TAGAGTGCGG CTTTATCGGT
ATTGTCCAGA AGGACGATAC AATATTGTTT CAGTTGCGGA AGTCCGCTTC AACAGTATCC
AAGTATCTGG GAGTGCTTAT GGATAAGTAC CCTAGAAGGA TTATGCTTAA TGCCAGCAGC
AACCCTTATT TGTCATTTAA ATTGATATAT TCCTCGGGAA GAGAAAATTT GGCAAATATT
AAGATTTTGT TACAATACAT TATTAAATTG CAGTATAATG AATAA
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| Protein sequence | MNFFTDPLLK IDEYNTLLSN VREERGPVSV IGPSDSQKVH LIYSLCTHLQ KRGLYITYNE
MQARRVYDDF SFFLGDDVLY YPPKETMLYN VEARSNDIIY QRTKTLLNCL EGNYKMVVMS
AEALIQMISP VELFREGIMD FYVGSQVNLD ELVSKLVLYG YERVESVEGK AQFAVRGGII
DVFAVNSEHP VRIELFDTDV DSIRHFDETT QRSTNSIDEC RIAPARDVVY KEVSREGIIS
KIKKDLADYI KKLKQKENRE GVKNISKRVE EDIDSLIEHH YFPGIDRYYP YILESPASVI
DYIESESIII MDETLRISQR IENVELEHEE LAKSLLEKGG ILPKGAQWTF STDSIVDRIL
NFRTITLSAI SSNNSLIRPY NQISIPCKSG NSYQNHIDLL VDDIGQLRKR EYKIIVLSGP
SGRGHRLVET LATNEIMSSY KEHPEYRIQN GEVVVTHGSL QKGFEYPTAA FVVISDIEVF
GQAKRIKKAK AKRAGNKIKA FSDLNIGDFV VHQAHGIGQY IGIENLSVGE VKRDYLKIRY
QEGDFLYIPT NQLDLLQKYI GSEGKTPRVN KLGGTEWAKT KSRVKESLQQ LAAELIKLYA
QRQSAKGHSF SEDTVWQRQF EELFPYQETD DQLKCIDEIK KDMESEGLMD RLLCGDVGYG
KTEVAIRAVF KAVMDGKQVA YLAPTTILAQ QLYENFKTRM NDFPVTVDVM SRFRTPAEQK
KIVKSVKAGN TDILIGTHRL LQKDVEFKDL GLLVIDEEQR FGVTHKEKLK TLKPNVDVLT
LTATPIPRTL HMSLVGIRDI SVLEDPPEER YPVQTYVMEY NMELIRDGII REMARDGQVF
YMYNRVRGID LKAQEIRKMI PDARVAVAHG KMNEKELEDV MYGFINGEYD VLVCTTIIES
GLDMPNVNTI VVEDADRMGL SQLYQIRGRV GRSNRLAYAY ITYKKDKVLS EVAEKRLQAI
KEFTEFGSGF RIAMRDLEIR GAGNLLGSEQ HGHLETVGYE MYCKLLDEAV QELSGKEVRT
TDEEMAVDLN VNAYIDNEYI SSEEQKIDMY KKIAAIQNEN DVIDLKDELI DRYGDIPEEV
ENLMDIAYIK ALAVECGFIG IVQKDDTILF QLRKSASTVS KYLGVLMDKY PRRIMLNASS
NPYLSFKLIY SSGRENLANI KILLQYIIKL QYNE
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