| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2488 |
|---|
| Symbol | |
|---|
| ID | 7312370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | + |
|---|
| Start bp | 3008046 |
|---|
| End bp | 3009743 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643609417 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_002506796 |
|---|
| Protein GI | 220929887 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000211561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT TAAGTTTTAA AGATTTAACT CTCTCGGATG AGGTACAACG TGCAATCGTG
GATATGGGCT TTGAAGAGGC AACCCCTATT CAGTCCCAAT CAATCCCATA TATCCTGGAA
GGCAACGATT TAATTGGTCA GGCTCAGACA GGAACAGGAA AAACCTGTGC ATTCGGAATA
CCAGCAGTGG AAAAAATCGA TCCACAAATT GATTCTATTC AGGTTTTGGT TCTTTCTCCA
ACTAGAGAGC TTGCCATACA GTCCTGCGAA GAATTGAGAA ATGTTTTGAA ATATAAGGAC
GGTATAAGAA TATTGCCTGT ATACGGCGGA CAGCCCATTG ACAGACAGAT TATGGCTTTG
AAGAAGCGTC CACAGATAAT CATTGGAACC CCCGGTCGTG TTATGGACCA TATGAGGCGC
AGAACTATAA AGTTGGAATC ACTTAAAATG ATAGTACTTG ATGAAGCAGA TGAAATGTTG
AATATGGGTT TCAGAGAAGA TATTGACACA ATATTGGAAA AAGTTCCCGA GGACAGACAA
ACCATATTGT TTTCTGCTAC AATGCCAAAA GAGATTCTCG AACTGACAAA AAAGTATCAA
AAGAACCCGG TTCATATAAA AATCGCCCAC AAGGAGCTCA CTGTCCCGAG TATAGAGCAG
TATTACCTTG AAGTAAAGGA ATCTGCAAAG CTGGAAGTTT TGTCAAGGTT GATAGATACC
AACGATATTA AGCTTTCCCT TGTTTTTTGT AATACAAAGA AAAGAGTTGA CGAACTGACA
GCCAGTCTCC AATCAAGAGG TTTTTCGGCG GAAGCTCTTC ACGGTGACAT GCGTCAGGAA
CACCGTGACA AGGTTATGAA TCTTTTCAGA AAGGGCAATT TTGATATACT CATTGCAACC
GATGTCGCTG CAAGGGGTAT TGACGTTGAT GACGTTGAAG CAGTATTTAA TTATGACCTT
CCCAACGACG ATGAGTATTA TGTACACCGA ATTGGTCGAA CAGGAAGGGC GGGAAGAACA
GGAAAAGCAT TTACATTTAT TTATGGCAGG GAAATGTACA AGCTCAGGGA TATACAGCGA
TATACCAAAT CGACTATTAT TCCCATGAAG CCGCCTAGTC TCAATGAGGT TGAAGAAAAG
AAGATGTCAA ACATTTTGAA AGCCTTGAAA GAAAACCTCA AGGATGAAAG TGTATCCAAG
TTTGCCAGCC ATATTGAAAG ATTTATTGAC ACAATCAATA ACGAATCGGA AGAACATGAC
GATAATTTTG TAAGCTCTCT TGACATTGCA GGAGCATTGC TCAAAATGTA CGGTGAACAA
AGCGGAAACC TGCCTAGTGT TGTTAATGAA ATTGACAATG CAGTAGAACC CGGCAGTAGT
AAGGACATGG TCAGATTGTT CATCAATATA GGAAGTGATA GCAAAATACA GCCCAAACAT
ATAATTGAAA GTCTTGTGGC ATCAACAGGG CTTCCGGGCA AACTTGTCGG TGCAATCGAC
ATTTTTGACA GATATTCATT CGTAGAGGTG CCAAAGGAGT TTGCTCCCGA AGTGCTAAAA
TCAATGAAGA ACTACACAAT TAAGGGAAAA CGTATTAATA TAGAAAAATC CAATGCTAGA
AAGAAAAGCG GACGGGGATC GTCATTCAAC CGCTCCACAC CGTTTAACAG ACGAAGTCCG
AAAAAATCTA AAGCATAA
|
|---|
| Protein sequence | MKNLSFKDLT LSDEVQRAIV DMGFEEATPI QSQSIPYILE GNDLIGQAQT GTGKTCAFGI
PAVEKIDPQI DSIQVLVLSP TRELAIQSCE ELRNVLKYKD GIRILPVYGG QPIDRQIMAL
KKRPQIIIGT PGRVMDHMRR RTIKLESLKM IVLDEADEML NMGFREDIDT ILEKVPEDRQ
TILFSATMPK EILELTKKYQ KNPVHIKIAH KELTVPSIEQ YYLEVKESAK LEVLSRLIDT
NDIKLSLVFC NTKKRVDELT ASLQSRGFSA EALHGDMRQE HRDKVMNLFR KGNFDILIAT
DVAARGIDVD DVEAVFNYDL PNDDEYYVHR IGRTGRAGRT GKAFTFIYGR EMYKLRDIQR
YTKSTIIPMK PPSLNEVEEK KMSNILKALK ENLKDESVSK FASHIERFID TINNESEEHD
DNFVSSLDIA GALLKMYGEQ SGNLPSVVNE IDNAVEPGSS KDMVRLFINI GSDSKIQPKH
IIESLVASTG LPGKLVGAID IFDRYSFVEV PKEFAPEVLK SMKNYTIKGK RINIEKSNAR
KKSGRGSSFN RSTPFNRRSP KKSKA
|
|---|
| |