| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2414 |
|---|
| Symbol | |
|---|
| ID | 7311079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 2908131 |
|---|
| End bp | 2909825 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643609336 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002506724 |
|---|
| Protein GI | 220929815 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAATA AGACGCGGAA GCGGCTTGGT GATTTGTTGC TGGAAGTCGA AATGATAACC
CCAAATCAGC TTGAGTCCGC TATTGAAGTG CAGAAAAAAA CCAGTGAAAA GCTAGGTTCT
ATACTTACAA AGCTAGGCTA TGTTACTGAG GATGATATAA TTCAAGTCCT TGAATTTCAA
CTTGGTATTC CACATGTTAA ACTTGAAAAA TATAATATTG ATAAGTCAGC TTATTTAGCA
ATACCTGAGA GTATTGCTAG GAGGTATGGG CTGATTCCTA TTAAAAAGGA AAACGGAACT
TTGACTGTTG CAATGAGTGA TCCTCTCAAT GTGTTTGCAA TAGATGACTT AAATATTTAT
TCAGGCATGG TGATACAGCC TGTTATTGCA AGCTTTGACG ATATTTCCAA AGCAATAGAC
AAATACTACA GTGCTCAAAA AGCCATGAAG GCTGTTGAGG AATTTAAAAA AGAACAAGTC
TCTACTATAA AAATAAATTC AGACACTACT GAAGAACAGA ATATTGAAGA AATTAATAAT
GCTCCTGCTG TAAAGGTTAT TAATTCTATT ATAGAGCAAG CTGTAAGAAA CCGAGCCAGC
GATATACATA TCGAGCCTTT TGAAGAATAT ATTAAAATCA GATTCAGAAC TGATGGTCAG
CTATGTGAAA TAATGCGCCC AGAAATTGAC ATAATGCCTG CGATTTCTGC ACGTATAAAG
ATTATAGGTG GTATGAACAT TGCGGAGAAA AGGCTGCCAC AGGACGGCAG GATAAGTATA
GAGGTTGACG GCAGAGAATA TGACCTAAGA GTTTCAATTC TTCCAACAAT TTTTGGGGAG
AAAATCGTTA TAAGGATTGC AGATAAAAAA GCTTTTGTTT TAAGCAGGAG CCAGCTAGGA
TTTAATGAAT ATGAGGAAAA GCAGTTTCAC AAGATGCTTC TTAATCCACA TGGTATTATT
CTGGTAACCG GGCCAACAGG AAGCGGGAAA ACTACTACCC TTTACAGTGC AATTAGTGAA
ATTAACAGCC CTGATATCAA TATTATAACG GTTGAGGACC CTGTAGAGTG CGTTATCGAA
GGGGTTAATC ATGTTCAGGT TAATACAAAA ACAGGTATGA CTTTTGCGAC GGGACTCAGG
TCTATTCTCA GACAAGACCC CGATGTAATT ATGATTGGTG AAATACGTGA CAGAGAGACT
GCTGAAATAG CTGTAAGAGC AGCAATAACC GGACATCTGG TTCTTAGTAC GCTCCATACA
AATGATGCAC CAAGCTCGGT TTTAAGGCTG ATAGATATGG GGATTGAACC CTACATGGTT
TCATCGTCGA TTGTTGGTGT TATTGCTCAG CGATTATACA AAAAAATTTG CAATAATTGT
AAAATAGAAT ATACAGCAAA TGATGATGAG AAAAGAATCT TGGGCATTAC CGATAAAGAG
ACTGTTTTAT ACAAGGGGAG AGGTTGTCCC ATGTGCAATC GTACCGGGTA CAGAGGACGA
CATGGAGTCT ATGAGTTGAT ATCAATTACA AAAAAGCATA AGGAAATGAT TAGTAATAGG
TGTTCGGAAG TAGAGTTAAG GAATTATTCT ATACAAAATG GAATGGTTAC TTTAAGAGAT
AATTTAGTAA AAAAGGTGCT GGCAGGAGAT ACAACCATTG ATGAATTAGT CCGCATAGCA
TATTCAAATG ATTAA
|
|---|
| Protein sequence | MFNKTRKRLG DLLLEVEMIT PNQLESAIEV QKKTSEKLGS ILTKLGYVTE DDIIQVLEFQ
LGIPHVKLEK YNIDKSAYLA IPESIARRYG LIPIKKENGT LTVAMSDPLN VFAIDDLNIY
SGMVIQPVIA SFDDISKAID KYYSAQKAMK AVEEFKKEQV STIKINSDTT EEQNIEEINN
APAVKVINSI IEQAVRNRAS DIHIEPFEEY IKIRFRTDGQ LCEIMRPEID IMPAISARIK
IIGGMNIAEK RLPQDGRISI EVDGREYDLR VSILPTIFGE KIVIRIADKK AFVLSRSQLG
FNEYEEKQFH KMLLNPHGII LVTGPTGSGK TTTLYSAISE INSPDINIIT VEDPVECVIE
GVNHVQVNTK TGMTFATGLR SILRQDPDVI MIGEIRDRET AEIAVRAAIT GHLVLSTLHT
NDAPSSVLRL IDMGIEPYMV SSSIVGVIAQ RLYKKICNNC KIEYTANDDE KRILGITDKE
TVLYKGRGCP MCNRTGYRGR HGVYELISIT KKHKEMISNR CSEVELRNYS IQNGMVTLRD
NLVKKVLAGD TTIDELVRIA YSND
|
|---|
| |