| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_2033 |
|---|
| Symbol | fliR |
|---|
| ID | 7310740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 2393831 |
|---|
| End bp | 2394628 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 643608967 |
|---|
| Product | flagellar biosynthesis protein FliR |
|---|
| Protein accession | YP_002506359 |
|---|
| Protein GI | 220929450 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.468794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGATAC CTTTTGGTAT GTTGCTTAAT AATGTAGAAC TATTTCTACT TATATTTGTA
AGAATGACAG GACTGTTTGT AACAGCTCCC ATATTCGGAA GAAGGAACAT ACCTGTATAC
TATAAAGTTG GGTTTGCCTT TATAACTGCT ATTTTGGCTT CTAGTGTCAT ACGGGTCGAT
CATATAATTA ATACTGATAA TTTTTTGATT TTTGCTTTAT ATATATTAAA AGAATTTTTA
GTAGGTATAA TAATAGGATT TGTAGCTTAT GCGGTTTTTA CGTGTATTTA TCTGGCAGGA
CAGATTATTG ATATGCAAAT TGGATTTGGA ATGGTAAATG TTTTTGATCC AATATCAAAT
ATTCAGATTC CTGTTACTGC AAACCTTTAC TTTATACTGT CAATGATAAT TTTTTTGCTG
ACTAATGGTC ATCACATGCT TATTAGGGCA TTATATGAAA GTTTTCAAAT TATACCATTA
GGGAGTGCCG TAATAGGCCC CAAGCTTAAA GACGATGTAA TAGGCATTAT GCAGGGAGTG
TTCAGTATGG GCTTCAAAAT AGCCGCTCCC ATAGTAGCTG CAATTTTTAT AACGGATGTT
GTTTTGGGAA TTATATCAAA GACCATACCT CAAATGAATG TATTTATACT TGGTATGCCT
TTAAAAATAT TTGTAGGAAT ACTTATTATT TTGATAACAA TACCTGCTTT TGTATACATA
GTAACGGTTA TTACAGATGA CATGAACACT CAGATATTCA AATTCCTTAA GGATATGGGG
AATTCCTTGA AAACATAA
|
|---|
| Protein sequence | MQIPFGMLLN NVELFLLIFV RMTGLFVTAP IFGRRNIPVY YKVGFAFITA ILASSVIRVD
HIINTDNFLI FALYILKEFL VGIIIGFVAY AVFTCIYLAG QIIDMQIGFG MVNVFDPISN
IQIPVTANLY FILSMIIFLL TNGHHMLIRA LYESFQIIPL GSAVIGPKLK DDVIGIMQGV
FSMGFKIAAP IVAAIFITDV VLGIISKTIP QMNVFILGMP LKIFVGILII LITIPAFVYI
VTVITDDMNT QIFKFLKDMG NSLKT
|
|---|
| |