| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1900 |
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| Symbol | |
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| ID | 7310622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium cellulolyticum H10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011898 |
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| Strand | - |
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| Start bp | 2256319 |
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| End bp | 2258190 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643608834 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_002506228 |
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| Protein GI | 220929319 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00488607 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGTATT TAGATAGCAT AAAATTTCCT GAGGATATAG GTAAATTAGA GCTTGAACAG
TTAAAAGTTC TTGCTGAAGA AATCAGGACA TTTCTTATAT ATAAAGTTTC GAAAACCGGG
GGGCATTTAG CCTCAAATCT TGGTATAGTT GAATTGACAC TTGCCATTCA TAGTAACTTT
AATACTAATA AGGACAGGAT TGTTTGGGAC GTAGGCCATC AATCATATGT CCATAAGATA
CTGACAGGCC GAAAGGCGGA TTTTGATACC TTACGTAAAT TGGGAGGGTT GGCCGGGTTT
CCTAAAACCT GCGAAAGCTT GCACGACTGT TTTAATACGG GACACAGCAG TACATCTATT
TCTGCTGCGT TGGGTATTGC CCGTGCAAGG GATATAAAAA AGGAAGATTA CAGTGTTATG
GCTGTAATAG GCGATGGAGC TATGACGGGC GGAATGGCCT ATGAAGCCTT AAATGATGCC
GGAAGACTGG CAAGTAACTT TATTGTGGTG CTTAATGACA ATGAGATGTC CATAGCACAG
AACGTGGGAG GTATGTCCAG ATATCTGAGC AAACTTCGTA CAGATCCTTT TTATACAAAA
ACTAAAGAGG ACATTGATAA TTTTCTTGAC AAGATGCCAA ATATTGGTAC TAAAACACGT
AGGGCTGTCC GAAAATTGAA AAGCACAGTA AAATATTTGA TTACACCCGG AATGTTTTTT
GAACAGCTGG GTTATAGATA TTATGGGCCT GTAGATGGCC ATAATCTGGA TGAATTGAAT
AAAGCATTAC AGGCAGCCAA AAAAATAAAA GGTCCCGTAC TTATTCACGT TTGCACTCAG
AAGGGAAAGG GTTATTCCTA TGCAGAAGAA AGTCCGGACA GATTCCATGG AATAGCACCA
TTTGAGATAG AGACAGGTGA AACGTACGGT AAGAGGCTGC CTGACTATTC CGAGGTCTTT
GGGGAAGCTG TTCTGGAGGC TGCCGAAAAG AATAACAGAG TTGTCGCCAT ATCGGCAGCA
ATGACAAAGG GGACCGGGTT AGCCAAATTT AGTACAACGT TTCCTAGAAG GTTTTTTGAT
GTGGGAATAG CTGAACAACA CGCAGTTACA TCTGCGGCCG GAATGGCTAT AAATGGTATA
ATACCTGTTG TTGCCATTTA TTCCTCTTTT TTACAAAGAG CCTATGATCA GTTGATACAC
GATGTAGCAC TACAAAAACT ACATGTAGTT ATAGGTGTAG ACAGAGCAGG GATTGTAGGT
GAGGATGGAG AGACACATCA GGGAGAATTT GATATATCAT TTCTGAACCA TATACCTGAC
TTTACAATAA TGGCCCCTGC TGATTATTAT GAGCTCAGGG AAATGGTTAA TTATGCCATA
AATATTCATA CCGGGCCTAT AGCAATAAGG TATCCAAGAG GCAGAGGTAA GGAAATTATC
AAACATGAAG TACCTTTAGT TAATGGAAAA GGGGCAGTGC TGAAAGAGGG GCAGGATGTC
TGTATACTTG CTGTGGGCAG AATGGTTGAA ACAGCTTTTA AGGTATCTGA AAAGTTAAAA
GAGAAGGGTA TAAATGCAGG AGTTGTCAGT GCAAGGTTTA TAAAGCCACT AGATGTAGAA
TTAATTACGG AATGTGCAAA TAAATATAAA AACATTGTAA CAATGGAAGA AAATTGTGTT
ATAGGAGGGT TTGGAAGCAG AGTTCTGGAT ACCTTGAACA GACTTGATTT AAAGGCACGT
ATCCTCATAA AGGGCCTACC CGAACAGTTC ATACCACAAG GTTCCAGAGA AGAGTTAATA
AAAAAACTCA AACTAGATGC AGACTCAGTA ACAAATGATA TAATATATAT GTTAGAAAAT
ACCAAGCTAT AA
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| Protein sequence | MGYLDSIKFP EDIGKLELEQ LKVLAEEIRT FLIYKVSKTG GHLASNLGIV ELTLAIHSNF
NTNKDRIVWD VGHQSYVHKI LTGRKADFDT LRKLGGLAGF PKTCESLHDC FNTGHSSTSI
SAALGIARAR DIKKEDYSVM AVIGDGAMTG GMAYEALNDA GRLASNFIVV LNDNEMSIAQ
NVGGMSRYLS KLRTDPFYTK TKEDIDNFLD KMPNIGTKTR RAVRKLKSTV KYLITPGMFF
EQLGYRYYGP VDGHNLDELN KALQAAKKIK GPVLIHVCTQ KGKGYSYAEE SPDRFHGIAP
FEIETGETYG KRLPDYSEVF GEAVLEAAEK NNRVVAISAA MTKGTGLAKF STTFPRRFFD
VGIAEQHAVT SAAGMAINGI IPVVAIYSSF LQRAYDQLIH DVALQKLHVV IGVDRAGIVG
EDGETHQGEF DISFLNHIPD FTIMAPADYY ELREMVNYAI NIHTGPIAIR YPRGRGKEII
KHEVPLVNGK GAVLKEGQDV CILAVGRMVE TAFKVSEKLK EKGINAGVVS ARFIKPLDVE
LITECANKYK NIVTMEENCV IGGFGSRVLD TLNRLDLKAR ILIKGLPEQF IPQGSREELI
KKLKLDADSV TNDIIYMLEN TKL
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