| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_1860 |
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| Symbol | |
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| ID | 7310583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium cellulolyticum H10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011898 |
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| Strand | - |
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| Start bp | 2212905 |
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| End bp | 2214464 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643608791 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_002506188 |
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| Protein GI | 220929279 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000892671 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGTA ATTTTTTAAA TTCCTTGGTA AGATATCTTG TGGAAAAGGA CTATTACCAC
CTTATATCTG CTGATAATCA GATACCTGAT TTTTCTAATG GTATTGCAAG TTTAATTAAA
GAGATACAGG GAACTTCTGT ATTTGTTGAA ATTATTGACG CAGACAGATA CGGAACAGAA
CAAATCAGGA ATATTATGTT AAACGGTGCA GCAATGCTGA ATAATATTCA AGGCAATAAC
GCTTATATTT TCAAGGTTTT TTTGTTTGAT AGTACTCCTG ATATGGATAA AGTTGAAATT
ATAAAGCAGC ATCAGATGGA TATTACTTCG GAAAAACGCT TTATGAAATG TATTTCTGTA
AACATTTCTG CAAAACAGGC TGAGAAATAT TTCAGTGTTC CTGCTTTCGA TGCCGGATTG
GTAAAGTCTT TTAAAAGATT TTTTTCTAAG GGACTTGATA AAAGAGAAAC CAGTTATAAG
GATATTGAAG ACGTTATTGA GAAAAGAAAA AAAGACTTTG AAATACAGTC CAAGGCTGAA
ACGCCATGGC TGACATACAT TATTATTGCT TTTAATATTG TTATGTGGGG CTTGTTGCAG
CTTGTGTCCA TGAGAACCGG AACCGCTTAT CAACAACAGC TGGAACCCTT TGGAGCAAAG
GTAAATAATC TCATTATGGA AGGGCAGTAC TGGAGATTTA TATCACCTAT GTTCCTGCAT
GGAGATATTG TCCACCTGGC TGTAAACTGC TATTCGCTGT ATATCATAGG GTCTCAGGTG
GAGAAAATAT TCGGACGAGG AAGGTTCTTG GCTATTTACT TTGTGTCGGG TTTCATTGGC
TCAGCAGCAA GTTTTGCATT CTCACTGAAT TCCTCTGTAG GGGCATCAGG TGCTATATTT
GGTTTAGTAG GTGCTATGCT CTATTTTTCG TTAAGACGTC CTGCACTTTT AAAAAGCAGC
TATGGTGTAA ATCTTATTAC TATGCTTATA ATAAACCTTG CTTATGGTTT TATGAACAAG
AGGATAGACA ACCATGCACA CATAGGTGGT TTTGTAGGAG GATTCTTGAC TGCTGGGGCT
GTATATTCCT ACAGGGAAAT AAATGGAAAA AACATATTGA AAAAAGTAAC ATCTATTTTA
CTTGTGGCAG CGATTACAAT GGGAATGTTA TTTTATGGCT TTAATAATGA TATAAATGTT
CTTTCTCCTA AGCTTGCTGC ACTGGAGCAG TCCGATATTC AGAATAACTG GCAGGAGTCT
GAAAAAAAAG CAGAGGAAAT TCTTGACTTG AACCCTTCCG ACAAAAATAC AAAGATTAGG
GTATTATGGT CATTAATCAG GGCTGAAATT GGTCAAGGAA AGCTGGATGA AGGTATTCAA
AATTCAATGG CCTTGGCAGA ATTGAGTCCG GCTGACGGAC ATTACCTGCT CGGAGTCATA
TACTATAATA CGAAAGAATT TGGTAAAGCT AAGCAGGAGC TTGAGCAAGC AAAAAAATCA
GGGTCTCCCA ATATTGATAA TATTAATGAA ATGCTTTCCG GTATTGAAAA CAGTAAATAA
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| Protein sequence | MKSNFLNSLV RYLVEKDYYH LISADNQIPD FSNGIASLIK EIQGTSVFVE IIDADRYGTE
QIRNIMLNGA AMLNNIQGNN AYIFKVFLFD STPDMDKVEI IKQHQMDITS EKRFMKCISV
NISAKQAEKY FSVPAFDAGL VKSFKRFFSK GLDKRETSYK DIEDVIEKRK KDFEIQSKAE
TPWLTYIIIA FNIVMWGLLQ LVSMRTGTAY QQQLEPFGAK VNNLIMEGQY WRFISPMFLH
GDIVHLAVNC YSLYIIGSQV EKIFGRGRFL AIYFVSGFIG SAASFAFSLN SSVGASGAIF
GLVGAMLYFS LRRPALLKSS YGVNLITMLI INLAYGFMNK RIDNHAHIGG FVGGFLTAGA
VYSYREINGK NILKKVTSIL LVAAITMGML FYGFNNDINV LSPKLAALEQ SDIQNNWQES
EKKAEEILDL NPSDKNTKIR VLWSLIRAEI GQGKLDEGIQ NSMALAELSP ADGHYLLGVI
YYNTKEFGKA KQELEQAKKS GSPNIDNINE MLSGIENSK
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