Gene Ccel_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcel_0536 
Symbol 
ID7309409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium cellulolyticum H10 
KingdomBacteria 
Replicon accessionNC_011898 
Strand
Start bp622362 
End bp623687 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content39% 
IMG OID643607470 
Productprotein-export membrane protein SecD 
Protein accessionYP_002504898 
Protein GI220927989 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.45038e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGGAA GCAACGCGGT TAAATTTTTC TCGATATTGG TTATCATCGG AATTTTAACC 
TGGATAGCAG CTTACGGTTC TATCCTGGGG GTTGAAATAC CTGGTGTTAG AGATATCAGA
ACAGGTATTG ATATTCAGGG AGGCGTAGAC GCAAGACTTT ATGCAGTTAC CAAGGATAAC
AGCAAGCCAA AGGCTGAGGA TTTGGATGCT GCAAGAATTA TTATCGGTAA GAGATTGGAT
TCAAAAAATA TCTTTGATAG AGTTATTACT GTAGATAAGG ATAAGGGATA CGTTCTGGTG
CAGATACCGC ATAAAAAAGG TGAAGCATTC GATCCACAGA GATCAATAGA AGAAATTGGT
AAAACCGCAT TATTAACCTT CCAAGAGGTT GACGAAAGTA AAAAAGATTC AAATGGTTAC
CTTCCAACCG GCAAGATTAT TCTTGAAGGT TCAGACGTAA AGGAGGCATC TGCTGAAGTT
GATGGCGAAA ACGGTGGTTA TTGCGTTGCA CTGACACTTA CATCAGAAGG CGGTAAGAAG
TTTTCAGAAG CAACGGGAAG ACTTATTGGG AAACCAATAG CGATTTTTAT GGACAATGAT
TTAATCAGTG CACCAAATGT TCAGACACAA ATTTCTGGTA ATTCCGCAAG AATTACTCTT
GGTGGTACTG CCAGTAATGA ACAAAGGGAT GAGGCTAAAA ATTTGGCCGG CCTTATTAAG
TCAGGTTCAT TGCCATTTAA GTTAGAGGCA AGGCAGGTAA ATAATATAAG CCCTACGCTT
GGGTCTAATG CACTTAAAGT TAGTATTGAA GCCTTTATAG TTGCACTTAT ACTGATTTGC
TTATTTATGA TATTCTATTA CAGATTGCCG GGTTTAATTG CAAGTATTGC TTTGATACTT
CATACAGTCA TGGAATTATT GGCTTTGTCC TGGACCAATA TAATCGTTAC TTTACCGGGT
ATAGCGGGTC TCATACTAAC AGTAGGTATG GCCGTTGATG CCAACGTTAT AATATTTGAA
AGAATAAAAG ATGAGCTTAA AAACGGAAAA ACCCTTCGTG CAGCTATTGA TGTTGGATTT
AAAAGAGCAT TCTCAGCTGT ACTTGACTCA AATATAACTA CTCTTATATC TGCCGTAGTT
TTATGGAAAT TTGGTTCAGG CCCTATACAG AGTTTTGCGT ATACTCTGGG AATAGGTGTT
GTATTAAGTT TCTTAACCGC TGTAACTGCT TCAAGGATAA TGCTGCAGTC AATACAGGAT
TTGGAAGTTG CAAAACACCA TTGGTTATAT GGCGTAAGTA TGAGAGGAGG AAAAGCAAAT
GGTTAA
 
Protein sequence
MRGSNAVKFF SILVIIGILT WIAAYGSILG VEIPGVRDIR TGIDIQGGVD ARLYAVTKDN 
SKPKAEDLDA ARIIIGKRLD SKNIFDRVIT VDKDKGYVLV QIPHKKGEAF DPQRSIEEIG
KTALLTFQEV DESKKDSNGY LPTGKIILEG SDVKEASAEV DGENGGYCVA LTLTSEGGKK
FSEATGRLIG KPIAIFMDND LISAPNVQTQ ISGNSARITL GGTASNEQRD EAKNLAGLIK
SGSLPFKLEA RQVNNISPTL GSNALKVSIE AFIVALILIC LFMIFYYRLP GLIASIALIL
HTVMELLALS WTNIIVTLPG IAGLILTVGM AVDANVIIFE RIKDELKNGK TLRAAIDVGF
KRAFSAVLDS NITTLISAVV LWKFGSGPIQ SFAYTLGIGV VLSFLTAVTA SRIMLQSIQD
LEVAKHHWLY GVSMRGGKAN G