Gene Ccel_0451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcel_0451 
Symbol 
ID7309330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium cellulolyticum H10 
KingdomBacteria 
Replicon accessionNC_011898 
Strand+ 
Start bp515132 
End bp516193 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content39% 
IMG OID643607381 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_002504813 
Protein GI220927904 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00180627 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAAGATT GTATAAAAAG AAATCAAACC AAAAAAATAA AGGTTGGAGA TATCTTCATA 
GGCGGAGATT CTCCAATCTC CGTTCAATCC ATGACCAACA CTGATACAAG GGATGTTAAG 
GCTACTATCC ATCAAATTAA AAGTCTTGAA GAGGCTGGGT GTGATATAGT CAGATTAGCA 
ATTCTGGATA ATGAAGCTGC AACAGCCATA GGCGAGATAA AAAAGCATGT AAAAATTCCT 
CTAGTTGCGG ATATCCATTA TGATTACAGA CTTGCAGTTG AATGTATGAA AAACGGTGTT 
GATAAAATAC GTCTAAATCC AGGTAATATC GGAGGCAATG ACCGAGTCAG AACAGTGGCA 
GGCATGGCAA AGGAGAGGGG AATTCCTATC AGAATCGGTG TTAATTCCGG TTCGGTAGAG 
AAGAGAATTC TGGAAAAATT CGGTGGTGTA ACTGCGGAAG GCATGGTAGA AAGTGCTTTG 
GCACACGTAG CTATGCTGGA AAATGTTGAT TTTAATGACA TAGCGATTTC TATTAAGGCC 
TCTAGCGTAC CGATGACAAT AGCTGCTTAC AGATTGCTCT CTGAAAAATG CTTATACCCT 
TTACATGTTG GAGTTACAGA AGCGGGAACA GTTTATAAGG GAACTATAAA ATCAGCAGTT 
GGTATAGGAT GCCTTCTTGC AGAAGGTATC GGTGATACTA TCAGAGTTTC ATTGACAGGG 
GACCCGGTTG AAGAGATAAA AGTTGGAAAG CAGATACTTA AGTCTCTGGA TTTATTAAAA 
GAAGGTATAG AGATTGTTTC ATGCCCTACC TGCGGTAGGA CTCAAGTTAA CCTTATAGAT 
ATAGCAAACA GCATAGAACC TCTACTGGAA AAGTTAAATA AAAATATCAA GGTAGCGATT 
ATGGGATGTG CTGTAAATGG ACCCGGTGAA GCTAAAGACG CTGATATTGG TATTGCGGGT 
GGTGTAAACG AAGTTTTACT ATTTAAAAAA GGTCGTATAA TCAGAAAAAT TCCTCAGGAA 
AACGTCGTTG AGGAATTAAT AAAAGAGATA AGTGAAATGT AG
 
Protein sequence
MEDCIKRNQT KKIKVGDIFI GGDSPISVQS MTNTDTRDVK ATIHQIKSLE EAGCDIVRLA 
ILDNEAATAI GEIKKHVKIP LVADIHYDYR LAVECMKNGV DKIRLNPGNI GGNDRVRTVA 
GMAKERGIPI RIGVNSGSVE KRILEKFGGV TAEGMVESAL AHVAMLENVD FNDIAISIKA 
SSVPMTIAAY RLLSEKCLYP LHVGVTEAGT VYKGTIKSAV GIGCLLAEGI GDTIRVSLTG 
DPVEEIKVGK QILKSLDLLK EGIEIVSCPT CGRTQVNLID IANSIEPLLE KLNKNIKVAI 
MGCAVNGPGE AKDADIGIAG GVNEVLLFKK GRIIRKIPQE NVVEELIKEI SEM