Gene Ccel_0340 details

Gene Information

• Locus tag: Ccel_0340
• ID: 7309228
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium cellulolyticum H10
• Kingdom: Bacteria
• Replicon accession: NC_011898
• Strand: +
• Start bp: 393148
• End bp: 393627
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 643607269
• Product: transcriptional regulator, CarD family
• Protein accession: YP_002504706
• Protein GI: 220927797
• COG category: [K] Transcription
• COG ID: [COG1329] Transcriptional regulators, similar to M. xanthus CarD

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.18012
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATAACG TAGGAGATAA AATTGTATAT CCCATGCATG GTGCGGGTGT TATTGAATCC 
ATTGAGGAGA AGGAAATACT TGGAAAGACA TGCAGCTATT ATGTTATGAA AATACCTATC 
GGTGATTTAA AGGTTATGAT ACCTACAAAC AATATTACTG ATATAGGTAT AAGAGACGTA 
ATAAGTGTTT CTGAAGCTGA CAGTGTCTTT GATTTTTTGA AGAACGGTCA GCATGAAATC 
CCGTCCAACT GGAATAAACG TTATCGGGAA AACATGGTAA AGATTAAGAG CGGTGACATT 
TTTGAAGTGG CTGATGTTGT AAGAGGCCTG ATGCAAAGAG AGAAGGAAAA GGGGCTTTCT 
ACAGGCGAAA GAAAAATGTT AAGCAGTGCC AAACAGATAT TAATAAGTGA ATTGGTTCTT 
GCAAAAGGCA TCAATCAACA TGATGTTGAG GTCAAAATCC AAGAGTACCT TTACGGCTGA 

 

Protein sequence

MYNVGDKIVY PMHGAGVIES IEEKEILGKT CSYYVMKIPI GDLKVMIPTN NITDIGIRDV 
ISVSEADSVF DFLKNGQHEI PSNWNKRYRE NMVKIKSGDI FEVADVVRGL MQREKEKGLS 
TGERKMLSSA KQILISELVL AKGINQHDVE VKIQEYLYG