Gene Ccel_0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCcel_0021 
Symbol 
ID7308943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium cellulolyticum H10 
KingdomBacteria 
Replicon accessionNC_011898 
Strand
Start bp21120 
End bp22688 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content36% 
IMG OID643606949 
ProductPeptidoglycan-binding LysM 
Protein accessionYP_002504389 
Protein GI220927480 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCTGG AGCTGTTAAA ACAGGCATTT AAAGTAAGCA ATTTATTAGG TGAGGATACA 
ATAGATAATG TTATTGAAAA TGATATAATT GTTCCGGATG TTAAACCGGA TATTGCCAAG
ATACTTCTTC TGGATGGGGA TGTTTTCGTT ACCGGGTGTG ATACAGGTAC TGACAGGGCC
GTAGTTTCAG GCTGCCTGCT GGTAAAGATT CTATATATTT CAGAAGATGA GAATAGAAGC
GTTAAAAGTA TTACGACAAA TATTCCATTT TCTTATACTT TGGATATCCC CGGTGTAAGA
AGCGGTGTAA AAAGCAGAGC AAAGGGTACA ATTGAGCATA TAGATTACAC CCTCCTTAAT
GAAAGAAAAG TAAATATTAA AGCTATTATA TCAATTAACT GCAAGGTAAC TGATGAAATA
GAAAGGGAGA TATCTTCAGG TATAACAGGT ATAGATGATA TTCAGGTTTT GAAGGATGAT
ATAGATATAA ATACCTATCT GGGCAGTAAC AAGGTAAACT TTATACTTAA AGAGGATATG
GAGCTGCCAT CTACTAAGCC TTCTGTTGCT GAAATTCTAA GAAATGATTT GAAGATTTCA
GGAAAGGATT TTAAAATAAC AGACGGAAAT GTGGTAGTAA AAGGTGATAT TAATATTGCT
ACCTTGTACA TAGCAGATGA TGAAACCAGA AGTATGCAGT ATATGGAGAA TGAGCTGACT
TTTACGCAGT TTATTGAACT GGAGGATGTT AAGGAGGATA CTTCTGTTAA TGTGGATTTT
GATTTGATCG ATTACAAGAT TGAACCTTTT GAGGACAGTG ACGGAGAAAA TAGAAATCTC
AGGGCTGAAG CCACTATAAA TATTTATGTA ACCGGCCTGT GTAAGAGGTC TTATGAGGTG
CTATCAGACG CCTACAGTCC AATAATTAGA ATCAATCTTG AAAAACAGCA ATTCTCAATT
GATGAAACCG TCTCGGAAAA CAGAAGCCAG CTTATTGTAA AGGATACATT GAATTTTGAG
GATTTCAACC CGGAAGTGCG TGAGATATTT AATGTCATTA GCAGATGCAG TGTATCTGAA
ACCCACTTAG AGGATGAAAA ATTAAATATA GAGGGTTCAG TGCTTAATAA TGTTATATAT
TTGTCCAACG ACGAAGAACA GCCTGTATTC TGTCATAGCA AGGAAATTCC CTTTAAACAC
GTTGTTGAGA TAAAGGGACT GAAAAATGAT ATGAAGGTTG ATACTAATGT GGAAATTGAA
CATTGCAATT ATAGTATGCT TTCATCGGAT CAGGTGGAAA TCCGCTGTGC GATAGGAATT
AATGCCAGAG TTGAAACAAA TAAGGTTATT CCCATCATAA ACAAAGCTAC GGAAGGTATC
ATAGATGAGA AGAAACTACT TTCTATGCCT AGTGTAATAA TATATATTGT GCAACCCGGT
GATAGTTTGT GGAAAATAGC AAAAAAATAC TCTACAACTG TGGAAAATCT TCTTATGGTA
AATAATTTAA ACGATAAGGA CGTTTTAATG CCGGGGCAGC AGCTGCTTAT TTTAAAAAGG
GCAATGTAA
 
Protein sequence
MSLELLKQAF KVSNLLGEDT IDNVIENDII VPDVKPDIAK ILLLDGDVFV TGCDTGTDRA 
VVSGCLLVKI LYISEDENRS VKSITTNIPF SYTLDIPGVR SGVKSRAKGT IEHIDYTLLN
ERKVNIKAII SINCKVTDEI EREISSGITG IDDIQVLKDD IDINTYLGSN KVNFILKEDM
ELPSTKPSVA EILRNDLKIS GKDFKITDGN VVVKGDINIA TLYIADDETR SMQYMENELT
FTQFIELEDV KEDTSVNVDF DLIDYKIEPF EDSDGENRNL RAEATINIYV TGLCKRSYEV
LSDAYSPIIR INLEKQQFSI DETVSENRSQ LIVKDTLNFE DFNPEVREIF NVISRCSVSE
THLEDEKLNI EGSVLNNVIY LSNDEEQPVF CHSKEIPFKH VVEIKGLKND MKVDTNVEIE
HCNYSMLSSD QVEIRCAIGI NARVETNKVI PIINKATEGI IDEKKLLSMP SVIIYIVQPG
DSLWKIAKKY STTVENLLMV NNLNDKDVLM PGQQLLILKR AM