Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mnod_7411 |
Symbol | |
ID | 7307789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium nodulans ORS 2060 |
Kingdom | Bacteria |
Replicon accession | NC_011894 |
Strand | + |
Start bp | 7499391 |
End bp | 7501679 |
Gene Length | 2289 bp |
Protein Length | 762 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 643604965 |
Product | ribonuclease R |
Protein accession | YP_002502451 |
Protein GI | 220927149 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00900108 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCCAAAC GCACTGCCCC GAAAGCCGAC CACGGCGCCC TTCCGTCCCG CGAGGCCGTC CTCGCCTTCA TCGCGGAGGC GACCACCAAG GTCGGCAAGC GCGAGATCGC CAAGGCCTTC GGCCTCAAGG GGGCCGACAG GCTCGAGCTC AAGCGCATGC TCGCCGAGCT CAAGGAGGAG GGAATCGTCG AAAAGGACCG TTCCGGCCTG CGCAAGGCCG GGCGCCTGCC GCCAGTCCTC GTCGCCGATA TCGATGCGCG CGACCGCGAC GGCGAGTTGC TGGCGAGCCC CGCCCAGTGG GATCCGGAGG CCGGCCCTGC CCCGAAGATT CTCGTCATGA TGCCCCGCGG GCGGCGCTCC GGCGCGCTGC CCGCGCCCGG CATCGGCGAC CGCGCGCTGC TGCGCGTCGA GCCCGACCGG GAGGCCCCCG GCCGCTATAT CGGCCGCGTC GTCAAGGTCA TCGGCCGCAA CAAGGCCGAG GTGCTCGGCG TCTACCGCGC CCTGGAGAAG GGCGGCGGAC GCGTCCTGCC CGTCGACAAG CGCGCGCAAG GCCGCGAGAT CGCGATTCCG GCCGGCCAGG AGGGCGAGGC GCGCGACGGC GACCTCGTCA GCGTGGCGCT CGCCCGCGAG GGGCGCCTCG GCCTGCCGCA GGGCCGCGTG AAGGAGCGGC TCGGCGCGAT CAGTTCCGAG AAGGCCGTCA GCCTCATCGC GCTCCACGCT CACGGCATCC CGCATGTCTT CCCCCGGGAG GTGCTGGCCG AGGCCGAGCG CGCGGCGTCG GCCGGGATGG AGAATCGCGA GGATTGGCGT GACGAGCCCC TCGTCACCAT CGATCCGCCG GACGCCAAGG ACCACGACGA CGCGGTCAGG GCGGTGCCGG ACCCGGATCC GGCCAATGCC GGCGGCTTCC TCGTTACGGT CGCCATCGCG GATGTCGCCG CCTATGTGCG GCCGGGCAGC CCCCTCGACC GCGAGGCGCT CGCGCGCGGC AACTCGGTCT ATTTCCCCGA CCGGGTCGTG CCGATGCTGC CGGAGCGGAT CTCGAACGAC CTCTGCTCCC TGCGCCCCGG CGAGGACCGG CCGGCCCTGG CGGTTCGCCT CGTCATCGGC GCGGATGGGC GCAAGAAGCG CCACAGCTTC CACCGGGTGA TGATGCGCTC GGCGGCGAAG CTCGCCTATG CGCAGGCGCA AGCGGCGATC GAGGGGCAGC CGGATGCGGT CACCCTCCCG CTCCTGGAGC CGAGCTTACG CCCGCTCTGG GCGGCGTATC GGCTGATGGC GAGGGCGCGC GACGCCCGCG GCCCCCTCGC CCTCGACCTG CCCGAGCGCA AGGTGATCCT CGATGCCGAA GGCGGCGTCG ACCGGGTCGT CGTGCCCGAG CGGCTGGAGG CACATCGCCT CATCGAGGAG TTCATGATCC AGGCCAACGT CGCCGCCGCG GAGACGCTGG AGGAGAAGGC CCAGGCGCTG ATCTACCGCG TGCACGACGA GCCCTCGCTC GAGAAGATGC GGGCGCTCGG CGAGGTCCTG GCCTCGATCG GCATCAAGCT GCCCAAGGAA GGGGTGCTGC GCCCCTCCCT GTTCAACCGC ATCCTCGGCC TCGTCGACGG CACCGAGCAT CAGGTCTTCA TCAACGAGGT CATCCTCCGG TCGCAGGCCC AAGCGGTCTA TGCGCCGGAG AATGTCGGAC ATTTCGGGCT GGCGTTGCGC CGCTACGCCC ATTTCACCTC GCCGATCCGG CGCTATGCCG ACCTCGTCGT GCACCGGGCG CTGATCCGGG CGCTCCGCCT CGGCCCGGAC GGGCTGCCCG ACATGGGGAC GGGCGAACTC GCCGAGATCG GCCAGCAGAT CTCCATGGCC GAGCGCCGCG CCATGGCGGC GGAGCGCGAG ACCATCGACC GGCTGATCGC CCAGCACCTC GCCGACCGCG TCGGGGCCAC CTTCGCGGGC CAGATCTCCG GCGCCACCCG CGCCGGGCTG TTCGTGAAGC TCGACGAGAC CGGCGCCGAC GGCTTCGTGC CGGTCTCGAG TCTCGGGGCG GATTACTTCC GCCTCGAGGA GGGGCGGCAC GCCCTCGTCG GCGAGCGCAC GGGCGAGACC TTCCGGCTCG GCGACCGGAT CACGGTGCGG CTCGTGGAAG CAGCCCCCGT TGCAGGCGCC TTGCGCTTCG AAGTGGTATC GGAGGGTGCA CGCGGCGCGC CGGCGCCGCG CCGGGGTGGC CTGCGCAAGG GGCGCGCGCT GCCGGAGCGT CGCGAGGGCC TGGCCAAGCG AAGGGGGAAG CGGGCATGA
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Protein sequence | MAKRTAPKAD HGALPSREAV LAFIAEATTK VGKREIAKAF GLKGADRLEL KRMLAELKEE GIVEKDRSGL RKAGRLPPVL VADIDARDRD GELLASPAQW DPEAGPAPKI LVMMPRGRRS GALPAPGIGD RALLRVEPDR EAPGRYIGRV VKVIGRNKAE VLGVYRALEK GGGRVLPVDK RAQGREIAIP AGQEGEARDG DLVSVALARE GRLGLPQGRV KERLGAISSE KAVSLIALHA HGIPHVFPRE VLAEAERAAS AGMENREDWR DEPLVTIDPP DAKDHDDAVR AVPDPDPANA GGFLVTVAIA DVAAYVRPGS PLDREALARG NSVYFPDRVV PMLPERISND LCSLRPGEDR PALAVRLVIG ADGRKKRHSF HRVMMRSAAK LAYAQAQAAI EGQPDAVTLP LLEPSLRPLW AAYRLMARAR DARGPLALDL PERKVILDAE GGVDRVVVPE RLEAHRLIEE FMIQANVAAA ETLEEKAQAL IYRVHDEPSL EKMRALGEVL ASIGIKLPKE GVLRPSLFNR ILGLVDGTEH QVFINEVILR SQAQAVYAPE NVGHFGLALR RYAHFTSPIR RYADLVVHRA LIRALRLGPD GLPDMGTGEL AEIGQQISMA ERRAMAAERE TIDRLIAQHL ADRVGATFAG QISGATRAGL FVKLDETGAD GFVPVSSLGA DYFRLEEGRH ALVGERTGET FRLGDRITVR LVEAAPVAGA LRFEVVSEGA RGAPAPRRGG LRKGRALPER REGLAKRRGK RA
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