| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_5252 |
|---|
| Symbol | |
|---|
| ID | 7306678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | + |
|---|
| Start bp | 5323911 |
|---|
| End bp | 5325458 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643602883 |
|---|
| Product | threonine dehydratase, biosynthetic |
|---|
| Protein accession | YP_002500401 |
|---|
| Protein GI | 220925099 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.871195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGACT ACATCAAGAA GGTCCTCACC GCCCGCGTCT ACGACGTGGC CATCGAGAGC
CCGCTCGACC GGATGCCGCG CCTCTCGGGC CGGATCGGTG CGCCGGTGCT CCTCAAGCGG
GAGGACCTGC AGCCGGTCTT CTCCTTCAAG CTGCGCGGCG CCTACAACAA GATGGCGGGG
CTGTCCCGGG AGGCGCTGGA GCGCGGCGTG ATCTGCGCCT CCGCCGGCAA CCACGCCCAG
GGCGTGGCGC TCGCCGCAGC CAAGCTCGGC GCGCGGGCGA CGATCGTGAT GCCGCGCACG
ACCCCCGCCA TCAAGGTCGA GGCCGTGCGG GCGCGCGGCG GGAACGCCGT GCTGCACGGC
GATGCCTTCG ACGAGGCCTA CGCGCATGCC AAGGCGCTGG AAGCCGAGCA GGGGCTGACC
TTCATCCACC CCTATGACGA TCCTGAGGTG ATCGCCGGCC AGGGCACGAT CGGGCTCGAG
ATCCTCCACC AGCATTCCGG GCCGATCGAG GCGATCTTCG TGCCGATCGG CGGCGGCGGC
CTCGCGGCCG GCATCGCCAT CGTGGTGAAG TTCCTGCGGC CGGAGACCAA GGTCATCGGC
GTCGAGCCGG AAGATGCGGC CGGCATGGCG GCGGCCCTGA AGGCGGGCGA GCGCGTGGTG
CTGAACTCCG TCGGGCTGTT CGCCGACGGC GTCGCGGTGC GGCAGGCCGG CGCCGAGACC
TTCCGGCTCT GCCGCGAGTA TCTCGACGGT GTCGTCACGG TCGGCACCGA CGCGATCTGC
GCTGCCGTCA AGGACGTGTT CGACGACACC CGCGCCATCT CGGAACCCTC CGGCGCGCTC
GCGGTGGCGG GGCTCAAGGC CTGGGCGGCG GAGAACGGGG CCGGTCCGGG CGGCGCGCTC
GTCGCCATCA ACAGCGGCGC CAACCTCAAC TTCGACCGGC TGCGCCACAT CGCCGAGCGG
GCCGAGCTCG GCGAGCGCCG CGAGGTGCTG ATCGCCGTCA CCATCCCCGA GCGGCGCGGC
AGCTACCGGG CCTTCATCCA GGCGCTGGGC CAACGCGCGA TCACCGAGTT CAACTATCGC
TACGCGGAAG GCCCGGACGC CCACATCTTC GTCGGCGTGC AGCTCCAGGG GCAGCCGGGC
GAGAAGCGCG CGCTGATCGC GAGCCTGACC GAGGCCGGCT ATCCGGTGCT CGACCTCAGC
GACAACGAGA TGGCCAAGAC CCATGTCCGC TACATGGTTG GCGGACGGGT GCCGGGCCTG
ACGGACGAGC GGCTGTTCCG CTTCGAGTTC CCCGAGCGGC CGGGCGCGCT CCTGAAGTTC
CTGGACGGGC TCGGCGACGC GTGGAACATC TCCCTGTTCC ACTATCGCAA CCACGGCGCC
GATTACGGCC GCATCCTCGC CGGGATCCAG GTTCCGGAGA GCGACCGCAC CCGGTTCCAG
CGGGCCCTCG ACGACCTCGG CTATCCCTAT CACGACGAGA GCGGCAACCC GGCCTACCGG
CTCTTCCTCG ACGGGAACAT GAGCGCCGAG GCGCCGCCTC CGGCCTGA
|
|---|
| Protein sequence | MHDYIKKVLT ARVYDVAIES PLDRMPRLSG RIGAPVLLKR EDLQPVFSFK LRGAYNKMAG
LSREALERGV ICASAGNHAQ GVALAAAKLG ARATIVMPRT TPAIKVEAVR ARGGNAVLHG
DAFDEAYAHA KALEAEQGLT FIHPYDDPEV IAGQGTIGLE ILHQHSGPIE AIFVPIGGGG
LAAGIAIVVK FLRPETKVIG VEPEDAAGMA AALKAGERVV LNSVGLFADG VAVRQAGAET
FRLCREYLDG VVTVGTDAIC AAVKDVFDDT RAISEPSGAL AVAGLKAWAA ENGAGPGGAL
VAINSGANLN FDRLRHIAER AELGERREVL IAVTIPERRG SYRAFIQALG QRAITEFNYR
YAEGPDAHIF VGVQLQGQPG EKRALIASLT EAGYPVLDLS DNEMAKTHVR YMVGGRVPGL
TDERLFRFEF PERPGALLKF LDGLGDAWNI SLFHYRNHGA DYGRILAGIQ VPESDRTRFQ
RALDDLGYPY HDESGNPAYR LFLDGNMSAE APPPA
|
|---|
| |