| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_4745 |
|---|
| Symbol | |
|---|
| ID | 7307737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | + |
|---|
| Start bp | 4823247 |
|---|
| End bp | 4824479 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643602387 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_002499913 |
|---|
| Protein GI | 220924611 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.745533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTACG GATCCGTTCC CGCCGTCAAT CCGGGGCCGC CCGTGCCGAA CACCCCGTCG
CCTCTCGCCC TGACCCAGGG CCTGATCCGC TGCCCCTCCG TGACTCCCGC CGAGGGCGGG
GCGCTCAGCC TTCTGGCGGA TCTGCTCGGT GCGGCGGGAT TCTCCGTCGA GCGCCCGGTC
TTCTCCGAGC CCGGCACGCC GGACGTGGAG AACCTCTATG CCCGCATCGG CACGGCGGGA
CCCTGCCTGC TCCTCGCCGG GCATACGGAT GTGGTGCCGC CCGGCGACCT CGCCGCCTGG
CGCCACGATC CGTTCGGCGG CGTCGTGGAG GAGGGCGAGG TGCATGGGCG CGGCGCCGTC
GACATGAAGG GCGGCATCGC CTGCCTCGCC GCCGCAATCC TCGCCTTCCT GGCCGAGCGC
GGGCCGGATT TCGGCGGCTC CATCGCCTTT CTGATCACCG GCGACGAGGA GGGGCCGGCG
GTCAACGGCA CGGTCAAGCT GCTGGCCTGG GCGAGGCAGA AGGGCGAGCG CTTCGACCAT
TGCATCCTGG CCGAGCCGAC CAACCCCGAC CGCCTCGGCG ACATGATCAA GATCGGCCGG
CGCGGCTCGC TCACCGCCGC GCTGACCGTG CACGGTGTGC AGGGGCATGT CGCCTATCCG
CACCGGGCCG AGAACCCGAT CCCCGGCCTG ATCCGTCTCG CGGGGGCGCT CCTCGCCGCG
CCGCTCGATG CGGGCACGGC GCATTTCGAC GCCTCGAACC TCGAATTCAC CACGGTGGAT
GTCGGCAACC CGGCCTCGAA CGTGATCCCG GCCGAGGCCC GGGCCGTCTT CAACATTCGC
TTCAACGATC TCTGGACGCC TGCGACCCTG GAGGCCGAGC TGCGCCGCCG CCTCGATGCC
GCGGCGGGCA ACGCGGTGCG CTACACCCTG GCCGTCCAGC CGACCAATGC CGTCGCCTTT
CTCACGCAGC CGGATCCCTT CGTGGATCTC GTCACGGCGG CGATCGAGGC CGAGACGGGG
CGTCGTCCGG CCCTCTCCAC CACCGGCGGC ACCTCGGATG CCCGATTCAT CAAGGATGCC
TGTCCGGTGA TCGAGTTCGG GCTCGTCGGG CAGACCATGC ATCAGATCGA CGAGCGGGCG
GCTCTGGCCG ACCTCGACCG GCTGACCGCG ATCTTCCGCC GGGTGCTCGA TGCCTATTTC
CCGGGCGATG CTGCGCTGCA GAAGCGGGCT TGA
|
|---|
| Protein sequence | MLYGSVPAVN PGPPVPNTPS PLALTQGLIR CPSVTPAEGG ALSLLADLLG AAGFSVERPV
FSEPGTPDVE NLYARIGTAG PCLLLAGHTD VVPPGDLAAW RHDPFGGVVE EGEVHGRGAV
DMKGGIACLA AAILAFLAER GPDFGGSIAF LITGDEEGPA VNGTVKLLAW ARQKGERFDH
CILAEPTNPD RLGDMIKIGR RGSLTAALTV HGVQGHVAYP HRAENPIPGL IRLAGALLAA
PLDAGTAHFD ASNLEFTTVD VGNPASNVIP AEARAVFNIR FNDLWTPATL EAELRRRLDA
AAGNAVRYTL AVQPTNAVAF LTQPDPFVDL VTAAIEAETG RRPALSTTGG TSDARFIKDA
CPVIEFGLVG QTMHQIDERA ALADLDRLTA IFRRVLDAYF PGDAALQKRA
|
|---|
| |