Gene Mnod_3038 details

Gene Information

• Locus tag: Mnod_3038
• ID: 7304129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylobacterium nodulans ORS 2060
• Kingdom: Bacteria
• Replicon accession: NC_011894
• Strand: -
• Start bp: 3129943
• End bp: 3131886
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 643600737
• Product: type VI secretion protein, VC_A0110 family
• Protein accession: YP_002498282
• Protein GI: 220922980
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGGG AATTCCTCGA CCTCTACAAC CGCGAACTCG GCGTCCTGAA CGAGGACGCG 
CGTGCCTTCG CGCAGGAATA TCCGGGCATC GCGGAACGCC TCGGCGGCCT CGTCGAGGAC 
CGCGCCGACC CGATGATCGC CGGCCTCCTC GAAGGCGCGG CGTTCCTGGC CGCGCGCGTG 
CAGCTCAAGC TCAAGCACGA ATTCCCCGAA TTCACCGCGA GCCTGCTCGA ACAGCTCGTG 
CCGCACTACC TCGCGCCGAC GCCCTCGGTG CTGCTCGCCC GAATCGGGGC GCCCTACGGC 
GACCCGGCCC TGCGCGCCGG GCGCCGGATC GCCCGCGGGG CGATCCTGGA TGCCGCCTAC 
AGCGAGCGCG AGCGCCGGGT CGCCTGCCGC TACCGCCTGA CGCGCGACGT GGTGCTGTGG 
CCCTTCGCGA TCACCGCCGC GGAGTACTGC GCGACCCCGG CGGGCTTGAG CGCGCTCGGC 
CTCCCGGTCG AGGCGGACGT CGCGGCGGGC CTGCGCCTGA CGCTGACGCA CCGCACCGCC 
GCCGATCCGG CGCAGGAGGA GGGCGCGGAC CCGGAGGCCG CCTCGATCGC GGGGTGCGCC 
GTCGACGACC TGCCGGTCCA CCTCGTCGGC CCGGAGGCGG ACGCGGTCGC GATCTACGAG 
GCGCTGTTCT CGGCCTCCGC GCGCGTCGCC TTCCGGGTGC TCGACGCCTT CGGGGACCCG 
GTCGTGGTGC CGGCGCCGCC CGGCTGCCTC GCGCCAGTCG GCTTCGAGCG CGAGGAGGCG 
CTGCTGCCGA ACGACCTGCG GGTCTTCGAG GGCTTTGATC TCCTGCGCGA GTACTTCATG 
TTCCCGCGCA AGTTCCTGGG CTTCCGCCTC ACCGGCCTGC GCGAGGTGCT GCCGCGGCTC 
ACGGCGCGCA GCGTCGACGT GATCGTGACC TTCCGGGAGT GCAATGCCCG CCTCGCCGCG 
GCCGTGCGGC CGGAGGCCTT CGCGCTCTAT GCGGCGCCGG CCGTCAACCT GTTCGAGATG 
ACGACGGACC GCGTGCCGGT GCGGGCCGGC GAGCACGAGC ACCACCTCGT GCCCGACCGC 
AGCCGCATGC TCGACTTCGA GCCGCACCGC GTGCTCGACG TCTACGCCCA CGTCGCGGGC 
CGGTCCGAGA AGCGCCGGGT CGAGCCGCTG CACGCGGCGC AGGGCGCCGC GCGGGCGACG 
GGCCCATCCT ATACTCTACG CCGCCTGCCG CGCCGCCGCT CGTCGGCAGA GCGGCAGGCG 
GCGCAGACCT CGGATTACTG CGGGACCGAG ATCTTCCTCA CCCTCGTCGA CTCGGCGCGC 
GAGGACGAGG AGCGCATCGC CGAACTCAGC GTGCGGGCGC TCTGCTCGAA CCGGCACCTG 
CCCGAGCACC TGCCGGTCGG GGCGGGCGGC ACCGACTTCC GCCTCGCGGA CGACGCCGAC 
CTGGAGGTGC TGTGCGTCGC CGGCCCGACG CGCCCGCGCG AGCCCGTGGT GGCGCAGATG 
CGCGGCCGGG CCGGGACCGC CTGGACCGGC GAGGTGGCGT GGCGCCTCGT GAACATGCTG 
AGCCTCAACC ACCTCGGGCT GGTGCGCCGC GGGGCGGGGG CGAGCGCCGA GGCGCTGCGG 
GAGATGCTGT CGCTCTTCGC CGACCTCTCC GACGCGGCGG TGGAGCGCCG CATCCGCGGC 
GTGCGCAGCG TCGACAGCCG CCCGGTGGTG CGGCGGCTGC GCCAGCGCCT CGGCACCGGC 
ACGGCGCGCG GCACCGAAGT GACCGTCACT CTCGACGAGC GCGCCTTCGA GGGCACCGGC 
GCCTTCCTGC TCGGCGCCGT GCTCGACCGC TTCTACGCCG AATATGCCGG GATCAACCAC 
TTCACCCAGA CCGTGATCCG CACGACGGAC CGCGGCGAGA TCATGCGCTG GCCGCCCCGG 
GCCGGCGCGA GGGCGCCGCT GTGA 

 

Protein sequence

MNREFLDLYN RELGVLNEDA RAFAQEYPGI AERLGGLVED RADPMIAGLL EGAAFLAARV 
QLKLKHEFPE FTASLLEQLV PHYLAPTPSV LLARIGAPYG DPALRAGRRI ARGAILDAAY 
SERERRVACR YRLTRDVVLW PFAITAAEYC ATPAGLSALG LPVEADVAAG LRLTLTHRTA 
ADPAQEEGAD PEAASIAGCA VDDLPVHLVG PEADAVAIYE ALFSASARVA FRVLDAFGDP 
VVVPAPPGCL APVGFEREEA LLPNDLRVFE GFDLLREYFM FPRKFLGFRL TGLREVLPRL 
TARSVDVIVT FRECNARLAA AVRPEAFALY AAPAVNLFEM TTDRVPVRAG EHEHHLVPDR 
SRMLDFEPHR VLDVYAHVAG RSEKRRVEPL HAAQGAARAT GPSYTLRRLP RRRSSAERQA 
AQTSDYCGTE IFLTLVDSAR EDEERIAELS VRALCSNRHL PEHLPVGAGG TDFRLADDAD 
LEVLCVAGPT RPREPVVAQM RGRAGTAWTG EVAWRLVNML SLNHLGLVRR GAGASAEALR 
EMLSLFADLS DAAVERRIRG VRSVDSRPVV RRLRQRLGTG TARGTEVTVT LDERAFEGTG 
AFLLGAVLDR FYAEYAGINH FTQTVIRTTD RGEIMRWPPR AGARAPL