Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | A2cp1_1410 |
Symbol | |
ID | 7299931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
Kingdom | Bacteria |
Replicon accession | NC_011891 |
Strand | + |
Start bp | 1575253 |
End bp | 1577094 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643594205 |
Product | protein-export membrane protein SecD |
Protein accession | YP_002491820 |
Protein GI | 220916516 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.447303 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACGCT CCTGGTACTG GCGCGTCGCG CTCGTCGTGG CGGTCGCGAT CCTGTCGATC TACCAGCTCG TCCCGAGCTG GTTCTACTTC AAGCTCCCGC CCGACCAGCG GAACACCGAG GCGTACGACA CCTCGGTGCC GGGCTGGGCG CCGGACGCGA AGCACCACCT CAACCTCGGC CTGGACCTCC AGGGCGGCAT CCTGCTCTCC ATGGGCGTGG ACGTCGACCG GGCGGTGAAG ACCAAGGTCG CCCGCCGCGC CGACGAGATC GGCGAGTTCC TGAAGGGCAA GAACGTCGCG TTCACCGGCA CGCAGGTGGT CGGCGGCGGC GCGCAAGTCG AGGTGGCCGC CGCGAACCCG GGCGAGGTGA AGGACGCGGT GCTCGGCTCC TCCGGCTACG CGGAGGAGAT GTACTCGCCG GGCGGCGCGC CGGAGGGCGC GGTCCGCTTC GCGTTCAAGG ACTCGGTGCT CCGCGACTTC CGCGAGAAGG CGGTGAAGCA GGCGGAGAAG GTCATCCGCA ACCGCGTGGA CAAGTGGGGC GTCACCGAGC CCGACATCAA GACCAAGGCG AACAACCAGA TCCAGGTCCA GCTCCCGGGC TTCAAGGATC CGGAGAAGGC CAAGGAGCTG CTGGGCCGCA CCGCGCAGCT CGAGTTCAAG ATCGCCGACG ACGAGAACCC GGCGCTCGAC CCGGTCCGCG GGCAGCTCCC GCAGTGCCAG GGCGACCGCC AGGGCCTGTC CCTGCCGCTC CCCGAGACCG GCTGCTGGAC GGTGGAGCCG GTCGAGCTGC CGAACGGCGG CACGCGCGCG GCCACCATGG TCGCGGCGAA CACCCGCACC GAGCTGGAGA AGGTCATCGC GGAGAAGCTG AACCCGCTGC TCGACCCGCA GAAGAACGCG GTCGGCATCG GCGAGGGCCA GGTCGGCCAG GGCCCCATCA AGACCACCTA CTACCGGACC TACCTGCTCC GCGCGAAGAC CGAGCTGACC GGCGACTACA TCGCCGACGC GGCGGTGGCC GTGGACCAGT CCGACACGCT CCAGCGCGGG CGCCCGGTGG TCTCCTTCAA GATGTCGCCC GAGGGGGCGC GCCTGATGGA GAAGCTCACC ACCGAGAACA TGCGGCGCCG GATGGCGACG GTGCTCGACG ACAAGGTCGA GACCGCGCCG TACATCCAGG GCCGCATCTC CTCCAACGGC CAGATCACGC TCGGCTCGGG CCGCAACCAG CAGGACATGT TCGACGAGGC GAACGGCATC GCGCTGGTGC TGAAGGCTGG CGCGCTCCCC GCGCCGGTGA CCATCACCGA GGAGCGCACC GTGGGCGCCA CCCTCGGGCC GGAGCTGGTG CGCAAGGGCA CGCTCGCGGC GCTGGTCGGC CTCGCGCTGG TGGTGGTGTT CATGGTCGTC TACTACCGCG GCACCGGCCT GGTGGCGGAC GTGGCGCTGG CGCTGAACGG CCTGCTGGTG CTGGCGGTCA TGTCGATGAT CGGCACCACG CTGACGCTGC CGGGCATCGC CGGGTTCGTG CTCACGCTCG GCATGGCGGT GGACGCGAAC GTGCTCATCA ACGAGCGCAT CCGCGAGGAG ATGCGCGCCG GGCGCAACGT GCGGCAGTCG GTGCAGCTCG GCTACGACCG CGTGTTCTGG ACCATCGTGG ACTCGCACGT GACCACGCTG GTCGCCGGCG TGGTGCTGTT CCAGTACGGG TCGGGGCCGA TCCGCGGCTT CGCGGTGACG CTGATCATCG GCCTGGTCGC CTCGATGTTC ACGTCGATCG TGGTGACCCG GGTGATCATG GAGTACTTCA CGCGCCACGA CACGGCGCGC CTGAGCGTCT GA
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Protein sequence | MERSWYWRVA LVVAVAILSI YQLVPSWFYF KLPPDQRNTE AYDTSVPGWA PDAKHHLNLG LDLQGGILLS MGVDVDRAVK TKVARRADEI GEFLKGKNVA FTGTQVVGGG AQVEVAAANP GEVKDAVLGS SGYAEEMYSP GGAPEGAVRF AFKDSVLRDF REKAVKQAEK VIRNRVDKWG VTEPDIKTKA NNQIQVQLPG FKDPEKAKEL LGRTAQLEFK IADDENPALD PVRGQLPQCQ GDRQGLSLPL PETGCWTVEP VELPNGGTRA ATMVAANTRT ELEKVIAEKL NPLLDPQKNA VGIGEGQVGQ GPIKTTYYRT YLLRAKTELT GDYIADAAVA VDQSDTLQRG RPVVSFKMSP EGARLMEKLT TENMRRRMAT VLDDKVETAP YIQGRISSNG QITLGSGRNQ QDMFDEANGI ALVLKAGALP APVTITEERT VGATLGPELV RKGTLAALVG LALVVVFMVV YYRGTGLVAD VALALNGLLV LAVMSMIGTT LTLPGIAGFV LTLGMAVDAN VLINERIREE MRAGRNVRQS VQLGYDRVFW TIVDSHVTTL VAGVVLFQYG SGPIRGFAVT LIIGLVASMF TSIVVTRVIM EYFTRHDTAR LSV
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