Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ddes_1929 |
Symbol | secD |
ID | 7285645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
Kingdom | Bacteria |
Replicon accession | NC_011883 |
Strand | - |
Start bp | 2322307 |
End bp | 2323887 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643582751 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002480503 |
Protein GI | 220905191 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.991559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCTGC GCTGGCGCCT GATCTTGGCT TCGTTGGTAT TTCTTGTTTC TCTTGTGTAC GCGCTGCCGA GCGTGCCCGT TATCGGGCCT GCCCTGGAGC GCGTTTTGCC GTCCAGCAAG ATCAATCTCG GTCTTGACCT CAAGGGGGGC ATACACCTGA CTTTGGGCGT GGACGTGGCC AAGGCCGTGA GCAATTCCCT GGCTCTGGCC GGGCAGGATC TGCGCCGTAT GGCCCAGGAT GAAAAGATCA TTGTGCTGCG CCCCCGCGTT GTGGGCGGCA CAACCCTTGA ATTCATTCTG CCCCGCGCTG AAAACGAGAG CAAGCTGCGC GAGATTCTGG CCCGTCATTT CCCCCAGTTG AGCGTGGCCC AGCCCCTGGC GGGCGAAGGC GGCCAGTTGC GCTATGTAGC CCACTTCACC CCGGCCGAAG TGAAAAGACT TGAAGACATG GCCCTTGACC AGGCACTGCG CACTATCCGT AACCGTATTG ACCAGTTCGG TGTGGCCGAA CCCGACATAC GCAAGCAGGC CGGCAACCGC ATTCAGGTGC AGCTGCCCGG CATTTCCGAT CCGCGCCGCG CTGTGCAGAT TATCGGCCAG ACGGCCCATC TGGAATTTCA TCTGGTCCGG GAGGATGTGG ACCCCGGCAA GGCTGTGCTG CCTCCCGGGG TTGTCGTTCT GCCCATGCTT GAGAAAAATC CCGGGCAGCA GGCGGCCGAA GGCCGTATTG CGGTTGAAAA GGACGCCATG CTCACCGGCG AAGATGTGGC TGATGCCCGT CCTGCCTTTG ACAACATGAA CCAGTCGTAT GTGACCATGA GCTTCAACGC CCGCGGAGCG CGTATTTTTG AGCGCGTCAC CGGTGAAAGC GTGGGGCGGC GCATGGCCAT TGTGCTGGAC GGCAAGGTGT ATTCCGCCCC TGTTATCCGT GAGCGCATCG GCGGCGGTAA GGCCAGCATC TCGGGTAACT TCACCACCGC CGAGGCCCAG GACCTGGCTA TTGTGCTGCG GGCCGGCTCG CTGCCTGCGC CTGTTTCGGT GCTTGAAGAA CGCAGCGTTG GCCCCTCCCT TGGGCAGGAA GCCATTGACA GCGGCATCAG TGCGGCCCTG GTGGGCGCAG CCGCCGTGGT CATTTTTATT GGTTTCTATT ACGGCGTCAG CGGCCTTATT GCCGACCTCA TGCTGTGTTT CACCATGCTT ATCGTCATGG CCGGCATGGG CGCGTTCGGC GCGACCCTGA CCCTGCCGGG CATTGCGGGC ATAGTGCTGA CCATCGGCAT GGCGGTGGAC GCCAACGTGC TCATCTACGA ACGAATACGC GAAGAGCTGC GGCTGGGGCT AACACCGCTG GCGGCAGTGC GCGCGGGTTT TGACCGGGCC ATGGTTTCCA TTACGGACGC CAACCTGACC TCCATTATTG TCACGGTCAT TCTGTACCAG TTCGGCACAG GCCCCATCAG AGGCTTTGCG GTAACCCTGG GGCTGGGCAT TGTTGCCTCC ATGTTTACGG CCATCTTCGT TTCGCGGGCC ATTTTTGAAG AATGGGCGCG CCATTGCGGT CCCAAGGGCC TGAGCATATA G
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Protein sequence | MGLRWRLILA SLVFLVSLVY ALPSVPVIGP ALERVLPSSK INLGLDLKGG IHLTLGVDVA KAVSNSLALA GQDLRRMAQD EKIIVLRPRV VGGTTLEFIL PRAENESKLR EILARHFPQL SVAQPLAGEG GQLRYVAHFT PAEVKRLEDM ALDQALRTIR NRIDQFGVAE PDIRKQAGNR IQVQLPGISD PRRAVQIIGQ TAHLEFHLVR EDVDPGKAVL PPGVVVLPML EKNPGQQAAE GRIAVEKDAM LTGEDVADAR PAFDNMNQSY VTMSFNARGA RIFERVTGES VGRRMAIVLD GKVYSAPVIR ERIGGGKASI SGNFTTAEAQ DLAIVLRAGS LPAPVSVLEE RSVGPSLGQE AIDSGISAAL VGAAAVVIFI GFYYGVSGLI ADLMLCFTML IVMAGMGAFG ATLTLPGIAG IVLTIGMAVD ANVLIYERIR EELRLGLTPL AAVRAGFDRA MVSITDANLT SIIVTVILYQ FGTGPIRGFA VTLGLGIVAS MFTAIFVSRA IFEEWARHCG PKGLSI
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