Gene Ddes_1929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1929 
SymbolsecD 
ID7285645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp2322307 
End bp2323887 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content61% 
IMG OID643582751 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002480503 
Protein GI220905191 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.991559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTCTGC GCTGGCGCCT GATCTTGGCT TCGTTGGTAT TTCTTGTTTC TCTTGTGTAC 
GCGCTGCCGA GCGTGCCCGT TATCGGGCCT GCCCTGGAGC GCGTTTTGCC GTCCAGCAAG
ATCAATCTCG GTCTTGACCT CAAGGGGGGC ATACACCTGA CTTTGGGCGT GGACGTGGCC
AAGGCCGTGA GCAATTCCCT GGCTCTGGCC GGGCAGGATC TGCGCCGTAT GGCCCAGGAT
GAAAAGATCA TTGTGCTGCG CCCCCGCGTT GTGGGCGGCA CAACCCTTGA ATTCATTCTG
CCCCGCGCTG AAAACGAGAG CAAGCTGCGC GAGATTCTGG CCCGTCATTT CCCCCAGTTG
AGCGTGGCCC AGCCCCTGGC GGGCGAAGGC GGCCAGTTGC GCTATGTAGC CCACTTCACC
CCGGCCGAAG TGAAAAGACT TGAAGACATG GCCCTTGACC AGGCACTGCG CACTATCCGT
AACCGTATTG ACCAGTTCGG TGTGGCCGAA CCCGACATAC GCAAGCAGGC CGGCAACCGC
ATTCAGGTGC AGCTGCCCGG CATTTCCGAT CCGCGCCGCG CTGTGCAGAT TATCGGCCAG
ACGGCCCATC TGGAATTTCA TCTGGTCCGG GAGGATGTGG ACCCCGGCAA GGCTGTGCTG
CCTCCCGGGG TTGTCGTTCT GCCCATGCTT GAGAAAAATC CCGGGCAGCA GGCGGCCGAA
GGCCGTATTG CGGTTGAAAA GGACGCCATG CTCACCGGCG AAGATGTGGC TGATGCCCGT
CCTGCCTTTG ACAACATGAA CCAGTCGTAT GTGACCATGA GCTTCAACGC CCGCGGAGCG
CGTATTTTTG AGCGCGTCAC CGGTGAAAGC GTGGGGCGGC GCATGGCCAT TGTGCTGGAC
GGCAAGGTGT ATTCCGCCCC TGTTATCCGT GAGCGCATCG GCGGCGGTAA GGCCAGCATC
TCGGGTAACT TCACCACCGC CGAGGCCCAG GACCTGGCTA TTGTGCTGCG GGCCGGCTCG
CTGCCTGCGC CTGTTTCGGT GCTTGAAGAA CGCAGCGTTG GCCCCTCCCT TGGGCAGGAA
GCCATTGACA GCGGCATCAG TGCGGCCCTG GTGGGCGCAG CCGCCGTGGT CATTTTTATT
GGTTTCTATT ACGGCGTCAG CGGCCTTATT GCCGACCTCA TGCTGTGTTT CACCATGCTT
ATCGTCATGG CCGGCATGGG CGCGTTCGGC GCGACCCTGA CCCTGCCGGG CATTGCGGGC
ATAGTGCTGA CCATCGGCAT GGCGGTGGAC GCCAACGTGC TCATCTACGA ACGAATACGC
GAAGAGCTGC GGCTGGGGCT AACACCGCTG GCGGCAGTGC GCGCGGGTTT TGACCGGGCC
ATGGTTTCCA TTACGGACGC CAACCTGACC TCCATTATTG TCACGGTCAT TCTGTACCAG
TTCGGCACAG GCCCCATCAG AGGCTTTGCG GTAACCCTGG GGCTGGGCAT TGTTGCCTCC
ATGTTTACGG CCATCTTCGT TTCGCGGGCC ATTTTTGAAG AATGGGCGCG CCATTGCGGT
CCCAAGGGCC TGAGCATATA G
 
Protein sequence
MGLRWRLILA SLVFLVSLVY ALPSVPVIGP ALERVLPSSK INLGLDLKGG IHLTLGVDVA 
KAVSNSLALA GQDLRRMAQD EKIIVLRPRV VGGTTLEFIL PRAENESKLR EILARHFPQL
SVAQPLAGEG GQLRYVAHFT PAEVKRLEDM ALDQALRTIR NRIDQFGVAE PDIRKQAGNR
IQVQLPGISD PRRAVQIIGQ TAHLEFHLVR EDVDPGKAVL PPGVVVLPML EKNPGQQAAE
GRIAVEKDAM LTGEDVADAR PAFDNMNQSY VTMSFNARGA RIFERVTGES VGRRMAIVLD
GKVYSAPVIR ERIGGGKASI SGNFTTAEAQ DLAIVLRAGS LPAPVSVLEE RSVGPSLGQE
AIDSGISAAL VGAAAVVIFI GFYYGVSGLI ADLMLCFTML IVMAGMGAFG ATLTLPGIAG
IVLTIGMAVD ANVLIYERIR EELRLGLTPL AAVRAGFDRA MVSITDANLT SIIVTVILYQ
FGTGPIRGFA VTLGLGIVAS MFTAIFVSRA IFEEWARHCG PKGLSI