Gene Ddes_1456 details

Gene Information

• Locus tag: Ddes_1456
• Symbol: rho
• ID: 7285153
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
• Kingdom: Bacteria
• Replicon accession: NC_011883
• Strand: +
• Start bp: 1744049
• End bp: 1745344
• Gene Length: 1296 bp
• Protein Length: 431 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643582266
• Product: transcription termination factor Rho
• Protein accession: YP_002480036
• Protein GI: 220904724
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00134709
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCAAAA AGAAAGCTAC CCCCACACTG TTGACAGACA GCGCCCTGAG CCTCACTGAC 
CTGAAGACCC GCAGCATGCA GGAACTCATG GATCTGGCTG AACAGTACGA GATTGAGAAT 
GCCAGTTCCA TGCGAAAGCA AGAGCTTATC TTCGCACTGC TTTCCACCTG CGCCTCGCAG 
AACGGTGCCA TCTACGGCGA CGGCGTGCTG GAGATACTGC CGGATGGCTT TGGCTTTCTG 
CGCTCGCCCC TTTGCAGCTA CATGCCGGGA CCAGACGACA TATATGTGTC GCCATCGCAA 
ATCCGACGCT TCTCCCTGCG TAAAGGTGAC ATTGTTTCCG GGCAGATCCG CCCGCCCAAG 
GAAGGGGAGC GCTACTTCGC CCTGCTGAAG GTTACCGAGA TCGGCTTTGA ACCGCCGGAA 
CATGCCAAAA ATCTCGTCCT GTTTGACAAC CTTACCCCCA TCTACCCCGA CCATCAGCTC 
GTCATGGAAA ATGGCGAGAA AAATCTTTCC AACCGCGTCA TCGACATCAT GGCCCCCATT 
GGTCGTGGTC AGCGCGGCCT TATTGTTGCC CCCCCCCGCA CAGGCAAAAC CATTCTGCTC 
CAATCGCTTG CCAATGCCAT CAACGCCAAT AATCCGGAAG TCTACCTTAT CGTGCTGCTG 
ATTGACGAGC GCCCCGAGGA AGTGACGGAT ATGGAACGTA CGGTCAAAAA GGCCGAAGTA 
ATCAGTTCCA CGTTTGACGA GCCGCCGCAG CGCCATGTGC AGGTCTGTGA AATGGTGCTT 
GAAAAGGCCA AACGCCTTGT AGAACGCAAG CGCGATGTTG TTATCCTGCT TGACTCGATC 
ACCCGCCTTG GCAGGGCCTA CAACGCCGTA ACCCCCTCGT CCGGGCGTGT ACTTTCCGGT 
GGGCTGGACG CCAACGCCCT GCAGCGGCCC AAACGCTTTT TCGGTGCGGC CCGTAACATC 
GAAGAAGGCG GCAGCCTGAC CATTATCGCT ACCGCCCTGA TTGATACCGG TTCACGCATG 
GACGAAGTAA TCTTTGAAGA GTTCAAGGGT ACAGGCAATA TGGAAATCTA CCTGGACCGC 
CATCTTTCGG AAAAGCGCGT GTTCCCTGCC ATCGATATCA ACCGCACCGG CACCCGCAAG 
GAAGACCTGC TGCTGCCCGA AGACGTGCTC AACCGCGTCT GGATACTGCG CAAGATTCTG 
GCCCCCATGT CTGCCATTGA CAGTATGGAA TTCCTGCTGG ACAAGATGCG CGGCACCAAA 
TCCAATAAAG ACTTTATGAA CGCCATGGGC AAATAG 

 

Protein sequence

MRKKKATPTL LTDSALSLTD LKTRSMQELM DLAEQYEIEN ASSMRKQELI FALLSTCASQ 
NGAIYGDGVL EILPDGFGFL RSPLCSYMPG PDDIYVSPSQ IRRFSLRKGD IVSGQIRPPK 
EGERYFALLK VTEIGFEPPE HAKNLVLFDN LTPIYPDHQL VMENGEKNLS NRVIDIMAPI 
GRGQRGLIVA PPRTGKTILL QSLANAINAN NPEVYLIVLL IDERPEEVTD MERTVKKAEV 
ISSTFDEPPQ RHVQVCEMVL EKAKRLVERK RDVVILLDSI TRLGRAYNAV TPSSGRVLSG 
GLDANALQRP KRFFGAARNI EEGGSLTIIA TALIDTGSRM DEVIFEEFKG TGNMEIYLDR 
HLSEKRVFPA IDINRTGTRK EDLLLPEDVL NRVWILRKIL APMSAIDSME FLLDKMRGTK 
SNKDFMNAMG K