Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ddes_1293 |
Symbol | |
ID | 7284985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
Kingdom | Bacteria |
Replicon accession | NC_011883 |
Strand | - |
Start bp | 1523887 |
End bp | 1526205 |
Gene Length | 2319 bp |
Protein Length | 772 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643582099 |
Product | penicillin-binding protein 1C |
Protein accession | YP_002479874 |
Protein GI | 220904562 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCGGG GCGGGCACAG TTTGTGGCGG CTATTCCGTC CGGCACGCTG GTATTTTGCC TCGCTGATTG CCGTTCTGGG GGCGGCTTTG CTCTGGCTGC ACCATGCCCC GTGCAAATAC CCCCTGGATG GCATCGGCTT TTCGCGCGTG GTCTATGATG GTAAAGGTGG CCTCATGCGC CTGAGTCTTT CCAAAGATCA AAAATATCGT ATACGTACGC GCTTGTCAGA TATTCCGCCC GCTGCCGTGG ATTCGGTTTT GCGTTATGAA GACCGTTATT ACTGGCAGCA TCCGGGGGTC AATGTCCTGG CTCTTGCCCG CGCCGGATTT GGTCTGTTGG CAGGCCGACG CATTATGGGC GGATCCACCA TCACCATGCA GGTAGCGCGG CTGACACATG GGCTGGAAAC GGGAAAAATT GGCGCAAAGC TGTGGCAGAT CGCTCTGGCC TTGCAACTGG AATGGCATTT CAGCAAGGAA GAGATACTTG AAGCCTACTT CAATCTTGCG CCTTACGGGG GTAATGTTGA AGGTCTTGGG GCTGCGGCAA TGGTGTATTT TCACAAGATT CCGGAGCAGC TGACCCCCGG AGAAAGCACT GCCCTTATGC TGGTGCCGCA GAATCCTGTG CGGCGGCGGC CTGCCGGGGA TAATACACAT TTCATGGACG CGTTCAGCCG CCTTGAGGCT GTCTGGCATG GCCGTCAAGA ACATGCGCCC TTGCGCGTAT ACGGACCCGA AAATTTGCCC TTTACAGCCC CCCATTTGAG CACCGAGCTT TTGCAGCAGG ATGGCAGTGA CACTCTGCAC ACCACGCTGG ACCCGGCAAG TCAGCGCCGT CTTGAGCGCC AGCTACGTTT GTTTACCGCA AGACGGCATG ATTACGGCCT TGTTAACGGG GCGGCGATGC TGCTTCATTG GCCCAGTATG GAAGTGCGGG CCCTTGCCGG TTCTGCAGAT TTTTTCAATG CTGCCATTAT GGGGCAGGTA GACGGAACCA GGGCGCGGCG TTCGCCCGGC TCTACACTCA AGCCTTTTAT CTATGCCTTG GCTCTGGATC AGGGGCTTAT CCACCCCTTG ACCTTGTTGG CCGATACGCC ACGCAGTTTT TCTGGTTATG ATCCTGAAAA TTACGACGGC AGTTTTCGAG GGCCTGTCAG CGCGAGTGAA GCGTTGAGGG CCAGCCGCAA TGTGCCTGCC ATTGCCCTGG CTGCCCGCTT GAGACAGCCT GGTTTTTATG AGTTTTTGAG CAGGGCCGGT GTGAATTTCG CATCCGGCGA AGAGCATTAT GGCTTGAGTC TGGTGCTTGG CGGGGCAGAG GTAAGCATGC GTGAGCTTGC CGGACTTTAC GCCATGCTTG CCAATAAGGG GGTTTGGCGT CCATTGCGCA TGCTGCAGGG CGACAGGCGC ACGGCGATTG CTCTGCCCCT GCTGTCGCCG GAAGCGTCGT ATGTTGCCCT CGCCATGCTG GAGGACGGGA ATCCGGATCG CCTTGTCCGT TCGCAGGGGG GGACAGTGTT GCCCTTGCGC CTTAAAACTG GCACCTCGAA CGGTTTTCGG GATGCGTGGG CCGCAGGTAT TGTCGGGCCG TATGTTCTTG TGGTTTGGCT CGGCAATTTT GATAACAAGC CCAATCCGCT GCTTGTGGGC GGCATCAGCG CCGTGCCGTT GTTTACGCAG ATAGCCCGTG ACATCGCAAT GGCCGAACCG TTGCAGGACT ATCAGGCGGA GCCTGCGCAC GGGCTTAATC TGGAGCGTGT GGAGGTTTGC GCGGCAACCG GAGACCTGGA CACATCTCTG TGCGAAGATA CGGTTAAAAC GTGGTTTATA CCGGGAGTAT CGCCGCTGGC TTCTTCCGGT GTATTCCGTC CCATACTCAT AGACAGGCAA ACGGGGCTGC GGGCCTGCAT GCCACAGGCA GACCGTACGG AGGTGCGTAT ATGGGAATTC TGGCCCACGG ATATGGCGCA GATGTTTGCA AGAGCCGGAA TGCCCAAGCC CGAACCGCCG CCTTTTGCCC TCGAATGCGG GCGTGAAAAC ATGATTACGG GCGAAGCGCC ACGTATAGTG CTGCCCAAGG ATGGTCTGAC CTACAAACTG AGCCTGAGCA GTCCGGGCCA TGAAAACATG GTTTTTATGG CTCACGCCGA TGCCGGTGTG AAAACCCTGC ACTGGTTTGT CAACGGCCGT TATCTGGGCA AGGGAGTGCC GGGCGAGGTC TTTTTATGGC GAGCCGTACC CGGTGACATT GAGCTTCGTG TAGTGGATGA CGCGGGTCGC GCCGGGAAAA AGCGCGTGCG TGTCCACGCT GTCCCCTAG
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Protein sequence | MSRGGHSLWR LFRPARWYFA SLIAVLGAAL LWLHHAPCKY PLDGIGFSRV VYDGKGGLMR LSLSKDQKYR IRTRLSDIPP AAVDSVLRYE DRYYWQHPGV NVLALARAGF GLLAGRRIMG GSTITMQVAR LTHGLETGKI GAKLWQIALA LQLEWHFSKE EILEAYFNLA PYGGNVEGLG AAAMVYFHKI PEQLTPGEST ALMLVPQNPV RRRPAGDNTH FMDAFSRLEA VWHGRQEHAP LRVYGPENLP FTAPHLSTEL LQQDGSDTLH TTLDPASQRR LERQLRLFTA RRHDYGLVNG AAMLLHWPSM EVRALAGSAD FFNAAIMGQV DGTRARRSPG STLKPFIYAL ALDQGLIHPL TLLADTPRSF SGYDPENYDG SFRGPVSASE ALRASRNVPA IALAARLRQP GFYEFLSRAG VNFASGEEHY GLSLVLGGAE VSMRELAGLY AMLANKGVWR PLRMLQGDRR TAIALPLLSP EASYVALAML EDGNPDRLVR SQGGTVLPLR LKTGTSNGFR DAWAAGIVGP YVLVVWLGNF DNKPNPLLVG GISAVPLFTQ IARDIAMAEP LQDYQAEPAH GLNLERVEVC AATGDLDTSL CEDTVKTWFI PGVSPLASSG VFRPILIDRQ TGLRACMPQA DRTEVRIWEF WPTDMAQMFA RAGMPKPEPP PFALECGREN MITGEAPRIV LPKDGLTYKL SLSSPGHENM VFMAHADAGV KTLHWFVNGR YLGKGVPGEV FLWRAVPGDI ELRVVDDAGR AGKKRVRVHA VP
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