Gene Ddes_1293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1293 
Symbol 
ID7284985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp1523887 
End bp1526205 
Gene Length2319 bp 
Protein Length772 aa 
Translation table11 
GC content58% 
IMG OID643582099 
Productpenicillin-binding protein 1C 
Protein accessionYP_002479874 
Protein GI220904562 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCGGG GCGGGCACAG TTTGTGGCGG CTATTCCGTC CGGCACGCTG GTATTTTGCC 
TCGCTGATTG CCGTTCTGGG GGCGGCTTTG CTCTGGCTGC ACCATGCCCC GTGCAAATAC
CCCCTGGATG GCATCGGCTT TTCGCGCGTG GTCTATGATG GTAAAGGTGG CCTCATGCGC
CTGAGTCTTT CCAAAGATCA AAAATATCGT ATACGTACGC GCTTGTCAGA TATTCCGCCC
GCTGCCGTGG ATTCGGTTTT GCGTTATGAA GACCGTTATT ACTGGCAGCA TCCGGGGGTC
AATGTCCTGG CTCTTGCCCG CGCCGGATTT GGTCTGTTGG CAGGCCGACG CATTATGGGC
GGATCCACCA TCACCATGCA GGTAGCGCGG CTGACACATG GGCTGGAAAC GGGAAAAATT
GGCGCAAAGC TGTGGCAGAT CGCTCTGGCC TTGCAACTGG AATGGCATTT CAGCAAGGAA
GAGATACTTG AAGCCTACTT CAATCTTGCG CCTTACGGGG GTAATGTTGA AGGTCTTGGG
GCTGCGGCAA TGGTGTATTT TCACAAGATT CCGGAGCAGC TGACCCCCGG AGAAAGCACT
GCCCTTATGC TGGTGCCGCA GAATCCTGTG CGGCGGCGGC CTGCCGGGGA TAATACACAT
TTCATGGACG CGTTCAGCCG CCTTGAGGCT GTCTGGCATG GCCGTCAAGA ACATGCGCCC
TTGCGCGTAT ACGGACCCGA AAATTTGCCC TTTACAGCCC CCCATTTGAG CACCGAGCTT
TTGCAGCAGG ATGGCAGTGA CACTCTGCAC ACCACGCTGG ACCCGGCAAG TCAGCGCCGT
CTTGAGCGCC AGCTACGTTT GTTTACCGCA AGACGGCATG ATTACGGCCT TGTTAACGGG
GCGGCGATGC TGCTTCATTG GCCCAGTATG GAAGTGCGGG CCCTTGCCGG TTCTGCAGAT
TTTTTCAATG CTGCCATTAT GGGGCAGGTA GACGGAACCA GGGCGCGGCG TTCGCCCGGC
TCTACACTCA AGCCTTTTAT CTATGCCTTG GCTCTGGATC AGGGGCTTAT CCACCCCTTG
ACCTTGTTGG CCGATACGCC ACGCAGTTTT TCTGGTTATG ATCCTGAAAA TTACGACGGC
AGTTTTCGAG GGCCTGTCAG CGCGAGTGAA GCGTTGAGGG CCAGCCGCAA TGTGCCTGCC
ATTGCCCTGG CTGCCCGCTT GAGACAGCCT GGTTTTTATG AGTTTTTGAG CAGGGCCGGT
GTGAATTTCG CATCCGGCGA AGAGCATTAT GGCTTGAGTC TGGTGCTTGG CGGGGCAGAG
GTAAGCATGC GTGAGCTTGC CGGACTTTAC GCCATGCTTG CCAATAAGGG GGTTTGGCGT
CCATTGCGCA TGCTGCAGGG CGACAGGCGC ACGGCGATTG CTCTGCCCCT GCTGTCGCCG
GAAGCGTCGT ATGTTGCCCT CGCCATGCTG GAGGACGGGA ATCCGGATCG CCTTGTCCGT
TCGCAGGGGG GGACAGTGTT GCCCTTGCGC CTTAAAACTG GCACCTCGAA CGGTTTTCGG
GATGCGTGGG CCGCAGGTAT TGTCGGGCCG TATGTTCTTG TGGTTTGGCT CGGCAATTTT
GATAACAAGC CCAATCCGCT GCTTGTGGGC GGCATCAGCG CCGTGCCGTT GTTTACGCAG
ATAGCCCGTG ACATCGCAAT GGCCGAACCG TTGCAGGACT ATCAGGCGGA GCCTGCGCAC
GGGCTTAATC TGGAGCGTGT GGAGGTTTGC GCGGCAACCG GAGACCTGGA CACATCTCTG
TGCGAAGATA CGGTTAAAAC GTGGTTTATA CCGGGAGTAT CGCCGCTGGC TTCTTCCGGT
GTATTCCGTC CCATACTCAT AGACAGGCAA ACGGGGCTGC GGGCCTGCAT GCCACAGGCA
GACCGTACGG AGGTGCGTAT ATGGGAATTC TGGCCCACGG ATATGGCGCA GATGTTTGCA
AGAGCCGGAA TGCCCAAGCC CGAACCGCCG CCTTTTGCCC TCGAATGCGG GCGTGAAAAC
ATGATTACGG GCGAAGCGCC ACGTATAGTG CTGCCCAAGG ATGGTCTGAC CTACAAACTG
AGCCTGAGCA GTCCGGGCCA TGAAAACATG GTTTTTATGG CTCACGCCGA TGCCGGTGTG
AAAACCCTGC ACTGGTTTGT CAACGGCCGT TATCTGGGCA AGGGAGTGCC GGGCGAGGTC
TTTTTATGGC GAGCCGTACC CGGTGACATT GAGCTTCGTG TAGTGGATGA CGCGGGTCGC
GCCGGGAAAA AGCGCGTGCG TGTCCACGCT GTCCCCTAG
 
Protein sequence
MSRGGHSLWR LFRPARWYFA SLIAVLGAAL LWLHHAPCKY PLDGIGFSRV VYDGKGGLMR 
LSLSKDQKYR IRTRLSDIPP AAVDSVLRYE DRYYWQHPGV NVLALARAGF GLLAGRRIMG
GSTITMQVAR LTHGLETGKI GAKLWQIALA LQLEWHFSKE EILEAYFNLA PYGGNVEGLG
AAAMVYFHKI PEQLTPGEST ALMLVPQNPV RRRPAGDNTH FMDAFSRLEA VWHGRQEHAP
LRVYGPENLP FTAPHLSTEL LQQDGSDTLH TTLDPASQRR LERQLRLFTA RRHDYGLVNG
AAMLLHWPSM EVRALAGSAD FFNAAIMGQV DGTRARRSPG STLKPFIYAL ALDQGLIHPL
TLLADTPRSF SGYDPENYDG SFRGPVSASE ALRASRNVPA IALAARLRQP GFYEFLSRAG
VNFASGEEHY GLSLVLGGAE VSMRELAGLY AMLANKGVWR PLRMLQGDRR TAIALPLLSP
EASYVALAML EDGNPDRLVR SQGGTVLPLR LKTGTSNGFR DAWAAGIVGP YVLVVWLGNF
DNKPNPLLVG GISAVPLFTQ IARDIAMAEP LQDYQAEPAH GLNLERVEVC AATGDLDTSL
CEDTVKTWFI PGVSPLASSG VFRPILIDRQ TGLRACMPQA DRTEVRIWEF WPTDMAQMFA
RAGMPKPEPP PFALECGREN MITGEAPRIV LPKDGLTYKL SLSSPGHENM VFMAHADAGV
KTLHWFVNGR YLGKGVPGEV FLWRAVPGDI ELRVVDDAGR AGKKRVRVHA VP