Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ddes_1080 |
Symbol | |
ID | 7284762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
Kingdom | Bacteria |
Replicon accession | NC_011883 |
Strand | - |
Start bp | 1265913 |
End bp | 1266569 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643581881 |
Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
Protein accession | YP_002479664 |
Protein GI | 220904352 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00830882 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGTCT TTTTCTTTGA CCTGGACGGT ACCCTGCTTG ATACGCTTGG CGATATCGGC AATGCCTGCA ATGCCGTACT GGCCCGGCAC GGTTACCCCA CGCACCCTCT GGCGGACTAC AGACGCTTTG TGGGACGGGG CTTTGACAAG CTGGTACGCG ACACCCTGCC TGCCGCAGCA GAGCTTGAGC CGCCGGCCCT GACACAACTG GTGGAAGAAA CCCGCCAGCA CTACGGCCGC CATATGTGCG ACACCACCCG CCCCTATGAA GGCATCATCC CGGCACTGGA AACCCTGGCC GCCAAGGGAT GCCCGCTGGC CGTGCTTTCC AACAAGCCGG AAGAACATAC GGTGGATCTG GTGCAGCGCT ACTTTCCTTC CATCCCCTTC GTTCTTGTAC GCGGCGGCAG AAAAAATGTT CCTCTTAAAC CACAGCCGCA GGCCCTGCTG GACATGGCTG AAACAATGCA TACTTCTGTG GCCCGGGTCC TGTACGTGGG CGACAGCGAC GTGGATGTGC AGACCGCGCG CAACGCGGGC ACAACGTCAG TGGGTGTGGC CTGGGGTTTT CGCGGCCCTG CGGAACTGCG CGCCGCTGGA GCCGATCATA TCATCGACGC CCCGGCCCAA CTGATTGAAC TGACGGTGGA GATATAG
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Protein sequence | MRVFFFDLDG TLLDTLGDIG NACNAVLARH GYPTHPLADY RRFVGRGFDK LVRDTLPAAA ELEPPALTQL VEETRQHYGR HMCDTTRPYE GIIPALETLA AKGCPLAVLS NKPEEHTVDL VQRYFPSIPF VLVRGGRKNV PLKPQPQALL DMAETMHTSV ARVLYVGDSD VDVQTARNAG TTSVGVAWGF RGPAELRAAG ADHIIDAPAQ LIELTVEI
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