Gene Ddes_1076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1076 
Symbol 
ID7284758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand- 
Start bp1262754 
End bp1263590 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content57% 
IMG OID643581877 
ProductFe-S cluster assembly protein NifU 
Protein accessionYP_002479660 
Protein GI220904348 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation
[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID[TIGR02000] Fe-S cluster assembly protein NifU 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.650115 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGAATT ACACTGAAGC CGTTCATGAC CATTTTCTGC GCCCGCACAA CGTGGGACCC 
CTGGAAGGAG CCAATGCCAT TGGCGAGGTG GGCAGCCTGG CCTGTGGCGA CGCTCTCAAA 
CTCTATCTCA AGATCAGCGA CAAGGGCATT ATCGAAAATG CCACCTTTGA AACATTTGGC 
TGCGCCAGCG CCATTGCCTC CAGCTCAGTG CTCACGGATA TGATCAAGGG TATGTCTGTT 
GAAGACGCTC TCAAGGTCAG CAACAAGGAC ATAGCCGATG CCCTGGGCGG TCTGCCCAAG 
CAGAAAATGC ACTGCTCCGT CATGGGACAG GAAGCGCTGG AGGCCGCCAT CCGCCAGTGG 
AAGGGCGAGC CGCCCGTGCC CCATGCGCAT GAAGAAGGCA AGCTGGTCTG TAAATGTTTT 
GGTGTCACCG ATGCACAGAT CATCCGCGCC ATTCGCGAAA ACGGCCTCAA GACCGTAGAA 
GAAATCACCA ACTACACCAA GGCCGGCGGA GCCTGCGGCG AATGCCTGGA TGAAATCGGC 
GAAATCCTTG CTGCCGAACT CAAGCAAAAG CCACTGGTGG AACTGAAGCC CAAGCCGCGC 
ATGACCAACG TGCAACGCAT GCAGCTGGTG CTCAAGACCA TAGAAGAAGA AATCCGCCCC 
GTGCTTGCTG CCGATGGTGG CGATATCGAG CTGGTGGATG TGGACGGCTT GCGGGTAGTA 
GTGTCCCTGC GCGGCCGTTG CTCGCAGTGT CGCGCCAGCG ATGTAACCAT TCGCGACCTC 
GTGCAGCGCC TCTTGCGTGA ACATGTTGAA CCAGATATTG TAGTTGAAGA GGCATAG
 
Protein sequence
MWNYTEAVHD HFLRPHNVGP LEGANAIGEV GSLACGDALK LYLKISDKGI IENATFETFG 
CASAIASSSV LTDMIKGMSV EDALKVSNKD IADALGGLPK QKMHCSVMGQ EALEAAIRQW 
KGEPPVPHAH EEGKLVCKCF GVTDAQIIRA IRENGLKTVE EITNYTKAGG ACGECLDEIG 
EILAAELKQK PLVELKPKPR MTNVQRMQLV LKTIEEEIRP VLAADGGDIE LVDVDGLRVV 
VSLRGRCSQC RASDVTIRDL VQRLLREHVE PDIVVEEA