Gene Ddes_0950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_0950 
SymbolispG 
ID7284630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand+ 
Start bp1106304 
End bp1107374 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content62% 
IMG OID643581750 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002479535 
Protein GI220904223 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCAGGA ATACCAGAGC AATACGCCTT GGCGGCGTTA CTGTGGGCGG CGGCGCGCCT 
GTTGTTGTTC AGAGCATGAC CAATACGGAT ACCCGCGATC CGCAGGCCAC CCTGGGGCAG 
ATTGCCCGTC TGGCGGCCCG TGGCTGTGAA ATGGTGCGCC TGGCCGTACC TGATGAGGCG 
GCCGTGGCGG CCCTGCCCGC CATACGATCA GGTACGCCCC TGCCGCTTAT CGCCGACATA 
CACTTTGACT ACCGCCTTGC CGTGGGCGCG CTGGAGGCGG GCCTTGAGGG GTTGCGCATC 
AATCCCGGCA ATATTGGCCC CAAGGCGCAT GTGGACAGGG TGGTAGATGC GGCCAAGGCG 
CACGGCGCGG TTATTCGCGT GGGCGTCAAT TCCGGCTCGG TGGAAAAGGA TATCCTGCGC 
AAGTATGGCG GGCCTTGCCC CGAAGCTCTG GTGGAAAGCG CCCTTGGGCA TGTGCGTCTG 
CTGGAAGCCC GCGCTTTTTA CGACACCAAG ATTTCCCTCA AGTCTTCCTC TGTGCTGGAT 
ACCATAACAG CCTACCGTCT GCTGGCCGCT GCCTGTGATT ATCCTACACA TATCGGCATC 
ACCGAGGCCG GGGGCCTCAT GCGGGGAACG GTCAAATCTG CCGTAGGGCT GGGCATCCTG 
CTGCACGAGG GCATAGGCGA CACCCTGCGC GTGTCGCTGA CGGCAGATCC CGCCGAAGAA 
GTGACCGTGG CCTGGGAGAT ACTGCGGGCC CTGGGCCTCC GCTCCCGCGG GCCGGAGATT 
ATTTCCTGCC CCACCTGCGG CCGCACCGAG ATAGATCTTT TTGCCCTGGC ACGCGCGGTA 
GAAGACCGCC TGGCAACATC CACGGCCTCC ATAAAGGTGG CGGTTATGGG CTGCGTGGTC 
AATGGTCCCG GGGAGGCGCG CGAGGCTGAT CTTGGCGTGG CCGGGGGCCG CGACAAAGGC 
ATTATTTTCC GCAAGGGCGA GGTCATCCGC TCCGTGAAAG GGCAGGAAGC CTTGCTGGCG 
GCTTTTATGG AAGAACTGCA ATCACTGCTT AACGAAAAGG AAAATACCTA A
 
Protein sequence
MGRNTRAIRL GGVTVGGGAP VVVQSMTNTD TRDPQATLGQ IARLAARGCE MVRLAVPDEA 
AVAALPAIRS GTPLPLIADI HFDYRLAVGA LEAGLEGLRI NPGNIGPKAH VDRVVDAAKA 
HGAVIRVGVN SGSVEKDILR KYGGPCPEAL VESALGHVRL LEARAFYDTK ISLKSSSVLD 
TITAYRLLAA ACDYPTHIGI TEAGGLMRGT VKSAVGLGIL LHEGIGDTLR VSLTADPAEE 
VTVAWEILRA LGLRSRGPEI ISCPTCGRTE IDLFALARAV EDRLATSTAS IKVAVMGCVV 
NGPGEAREAD LGVAGGRDKG IIFRKGEVIR SVKGQEALLA AFMEELQSLL NEKENT